| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1124 |
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| Symbol | |
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| ID | 5612651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1339388 |
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| End bp | 1340599 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931973 |
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| Product | ribokinase |
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| Protein accession | YP_001472863 |
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| Protein GI | 157374263 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0524] Sugar kinases, ribokinase family |
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| TIGRFAM ID | [TIGR02152] ribokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC TAAGCCGAAA TGAAAGACTG ACAGTTATCT TAAAGCTGCT CAGCGAACAT
AAAACCTTAT CAAATGCGCA ATTAGCCAAG TTGCTTCAGG TGACGCCAAA GACCATTCGT
TGTGATCTGG TGCATCTGGA ACAGGAAAAG CAAGTGATAA GGACTCATGG CGGTGTACAA
GGTTCTGCTG AATTCGATGC CGATAAATAT TGTCTGGATA GCTTACTGTC TCAGTTAACT
GCCAGCAGCT CTTTATCAAA TCTTATGACC CAGAGCCTCA TAAACGATGG GGTCAGCAAG
ATGAAAAATA AGATTTTTAT ACTCGGTTCC TTTAACGTCG ACATCGTCGC CAAATTGGAG
CGTTTCCCGC AGCCCGGCGA GACACTGCAT TCGCTGAGTA ATAATATCGG CGCGGGCGGC
AAGGGAGCAA ACCAGGCCTA TGCAGCGGCT AAGTCCGGGG CTAACGTCAC CTTCATGACT
AAGATAGGCA AAGATCAATT CAGCCACTTT GCCAAAGAAC ACCTCGCCGG CACAGGAATA
GATAATACGA TTATCGTGGA ATCTGAGACC TCGCCGACGG GGAATGCACT TATCTATGTC
TGTGAACAGA CAGGCGAAAA TATGATAGCC GTGCATTCGG GTGCCAACAC CGAAATCACT
CAAGATGAGA TCTTACAAGC CGAGCAACAT ATTGTCGGCG CAAATCTATT TCTGACACAA
CTCGAGAACA ATATCGACGC CATCAAGCAA TCCATGATGA TAGCCCGTAA CCATGGGGTG
AAAGTGGTGC TCAATCCAGC GCCTTATCAT GATGAGACAC CAGAGCTGTT AGAGTTTGTG
GATGTTATCA CGCCAAACGA GACCGAAGCC TCGTTAATGA CTGGGATCGA GGTCACCGAT
CTAAGCAGCG CCAAACAGGC AGCCGAGAAG ATCAACCAGA TGGGCGTTAA TACCGTGGTC
ATCACCCGTG GCTCCCAAGG CGTTCTTCTG TATGAAAATG AGCGCTTCAT CGAGATTGCA
GCTATAAAAT GTGCCGTCAC CGATACCACA GGTGCTGGTG ATGCCTTTAA CGGCGCTCTG
GTCGCCCGAC TCGTCAAGGG GGAAACCCTC CACGACGCCG GTAAATACGC CAACGCATAC
GCATCGCTGG CCGTCGAACG TGAAGGTGCG GCCAATATGC CCGATGCGGC ACTGGTTGCC
TCACGACTGT AG
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| Protein sequence | MNKLSRNERL TVILKLLSEH KTLSNAQLAK LLQVTPKTIR CDLVHLEQEK QVIRTHGGVQ
GSAEFDADKY CLDSLLSQLT ASSSLSNLMT QSLINDGVSK MKNKIFILGS FNVDIVAKLE
RFPQPGETLH SLSNNIGAGG KGANQAYAAA KSGANVTFMT KIGKDQFSHF AKEHLAGTGI
DNTIIVESET SPTGNALIYV CEQTGENMIA VHSGANTEIT QDEILQAEQH IVGANLFLTQ
LENNIDAIKQ SMMIARNHGV KVVLNPAPYH DETPELLEFV DVITPNETEA SLMTGIEVTD
LSSAKQAAEK INQMGVNTVV ITRGSQGVLL YENERFIEIA AIKCAVTDTT GAGDAFNGAL
VARLVKGETL HDAGKYANAY ASLAVEREGA ANMPDAALVA SRL
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