Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1117 |
Symbol | |
ID | 5611597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1330518 |
End bp | 1331222 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931966 |
Product | hypothetical protein |
Protein accession | YP_001472856 |
Protein GI | 157374256 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02001] conserved hypothetical protein, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACAA CGATTAAAAA TCTTGCGCTA CTTGGCCTAA TCGCTTTACC GACAACGGCA ATTGCCGGGG TTAGTTCAAC CGTCACCGCA GTCTCTGATT ATACCTTCAA CGGTGTAAGC CAGACAGACA ATAGTCCGGC AATACAGGCC AGTCTCGATT ATGCTTCAGA TGCTGGCTGG TATGTGGGAA GTTGGGCATC AAACGTCGAT TTCGGTTCGG GTGATGATAC CTGGCTGGAG CTGGATTTTT ACGCCGGTCA CTTCCTCCAA CTCTCGGAGC GAGTGTCACT GGATGCCGGT ATCGCTTATT ACACCTACCA TGGCGACTCC TTCTCGGATG AGTACCAATA TCCGGAGCTG TATACCAAGT TTGGCTATGC ATCGTCTGTT GGGCAGAGTG AACTGAACTT CTGGTACACC TGGGATTACT TTGGCGTCGA TACGGGCCAT TACATCATGA TGGCTGCACA CACCTTTAGT GTCGCCGAAG GTCATGATAT TCGTGTCAGT TTCGACCGCT CGACATCGCT CGATGAAGAC AAGTGGGCAT GGGATGGCGA TAAGGCCTAT AACCATTACC GCGCCGAGTA TATGACAAGC TGGAAAGGCT TCGATTTTAA TCTCGCCGTG GAAGATACCA GCATGGATAC CGATGCCAGC GATACCCGAG CGGTATTGTC TGTGGCGCGC ACCTTTGCTT TTTAA
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Protein sequence | MKTTIKNLAL LGLIALPTTA IAGVSSTVTA VSDYTFNGVS QTDNSPAIQA SLDYASDAGW YVGSWASNVD FGSGDDTWLE LDFYAGHFLQ LSERVSLDAG IAYYTYHGDS FSDEYQYPEL YTKFGYASSV GQSELNFWYT WDYFGVDTGH YIMMAAHTFS VAEGHDIRVS FDRSTSLDED KWAWDGDKAY NHYRAEYMTS WKGFDFNLAV EDTSMDTDAS DTRAVLSVAR TFAF
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