| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1101 |
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| Symbol | |
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| ID | 5612103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1308533 |
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| End bp | 1310674 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931950 |
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| Product | transcriptional regulator domain-containing protein |
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| Protein accession | YP_001472840 |
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| Protein GI | 157374240 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000631181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00725129 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAAAGA TAAGAAAAGA GGCTGTATTT AAGTTGGAAG GCTGTGAAGT CATGCCCGGT
GAGAATAGTC TTAACTTCTG TGAGCCCGTT CCGGATAGCG TGACTCCGGG AAAGGTCTCT
ATTCAGCCCA AATTTATCGA GTTGCTGAGT TATCTTGCAA GAAAATATCC AAATGTCGTA
ACCCGCGATG AGCTTATCGA CAACATCTGG GAAGGGAATA CCTATGTCGG TGCGAAGGCG
TTAACGAATG CTATCTGGCA TCTGAGAAAA CATCTCAACC CTCTGCTTAG CGGCGAGCAA
GCGATAGAAA CCGTCAGAAA AACCGGTTAT CGATTATTGA TTGAACCTCT GTTTGATGCC
TCGGACTTGG TAGATGAACC CGAAATATTA CAAGTCGAGC AGGCTAAGGT TGAGCGCTTA
AGTAAGCAGT TACGCTTGAG GTCGTATGCC ATGCTTGTAA TCCTGCTCGT TGTGGGTGTG
TTCGCCGGTT TGCATCTGTA TCAGGACAGT AAGCAATTGC GTCAAACTGA AATGGTACAA
TTGACGCGGG CTGCGGGGGC TGAGTTGTAT CCGGCTGTTT CGCCCGACGG ACGTTGGTTG
GTTTATGGTA AGCGGTCTAA TTTGTACCTC AAGGATTTAG AGTCGCCGAC CCTGACACCC
AAGCGACTGA CATCGAAACG GACCCGTGAA CTCAGGGCTA TCTGGTCGTC TGATGGTAAA
TCACTGATAT ATCCCAGTGA AGACAGAGTT ACCCGCGAAT GCCATATGAA TCGCCTTATG
TTAGAGACGA ATGAAGTGAG CTATCTATCT GAGTGTTACA GTTATACCTC TGCGTTAGAT
ATCTCTGCCG ATGGTCGTTC GCTTATCTAT ATATGGAAAG AGAAGGAGAG GGAGGAGCTT
GATGCGGGCC TCTACCTGCT CGATCTCTTA TCCGCAGAAC TTGCTCCGCT GAGACTATCA
TGTGAGCGTG ATTGTGGTTA CAGGGACAGA GATGTTGCCT TCAGTCCCGA TGGGAAGTGG
ATTGCTATAG CGAGGCGATA TGGCACGATT TCTGAGGATA TTTTTATACG GAACATTGTA
ACCGGCGATG AGGTTCGTCT GACTCAAGGT TTAGAGGATA TTCGTGGTTT GAGCTGGGAT
CAGGATAGTC AGAAGCTGGT TTTCAGTACT GAAAACTCAG GATTCAGGGA TGGTTTTATT
GTCGATATTG AGTCGAAAGA GATGTTGCCG CTGTCGATCT CAGGGTTCAG TTACCCAAAA
TTTATTCCCC ATAGAGATGA GGTGGTCTAT TCCAACTATA TCAAAGATTT TAGTGTTGCT
TATTTGGCTC TGGACCAGGA CATTCCCTCG ACGGTTTTTC CAATATCCCA AGCGGAGTAT
AGTTACCGTA ACCCCGATTA CTCATCGAAA GCCAAACGTA TCGCCTATGT GTCCAACGAG
ACCGGGTTCA ATGAGATATG GACGTCAGAT CATAATGGAT TAAACAGAGT ACAACTTACC
GATCTTAAGC GGAGGGTCGC CTATCCGGCA TGGTCCCATG ATGGTAGCAA AATTGCGTTC
CTGGCTCCGG ACGATAAAAA TGAAGGGAAT AAGATCCATA TTGTAGACCT CTCCAGCGGC
GGGATCAGCA TATTACCTTC GAGGTCTTCA GATCATAGAA GACCGAGCTG GGCATGGGGA
GATGAATGGG TGCTATCATC GACCAATGAT GGCTTAACCG CCTTCTCACT GCACAACCAT
TCCCCCAAGC ATCTGAGCTC TATCGATGTA CGTTTAGGTA AGATGACCGA TGCAAATACC
TTAGTATTTA CCCGCTATGA TGAATATGGC CTCTGGTCTA TGGATATTTC GAATCCACAA
CAAGTGGAGC CCTTAATTGC TATAGAGGAC TTTAGCGAGA GTTACAACTG GGTAGTGACT
GACAAAGGGG TCTATTTTCG TGAGGTCAAC GCAGGGTATC AGCTGATAAA TTTCTGGAGC
TTTAATACCG ATCTCACCAC GCCTATTTTA AAATTGCCCG CGAGCAGTTT GAGCTCTTTT
GGGGCCATGA GCTATATTCC CGGCGAAAGA CGCCTGCTGA TGACCCTGTC TGAGTATTCG
AAGCGTGATG TGATTAAACT TAAACATAAA CTATTGCATT GA
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| Protein sequence | MIKIRKEAVF KLEGCEVMPG ENSLNFCEPV PDSVTPGKVS IQPKFIELLS YLARKYPNVV
TRDELIDNIW EGNTYVGAKA LTNAIWHLRK HLNPLLSGEQ AIETVRKTGY RLLIEPLFDA
SDLVDEPEIL QVEQAKVERL SKQLRLRSYA MLVILLVVGV FAGLHLYQDS KQLRQTEMVQ
LTRAAGAELY PAVSPDGRWL VYGKRSNLYL KDLESPTLTP KRLTSKRTRE LRAIWSSDGK
SLIYPSEDRV TRECHMNRLM LETNEVSYLS ECYSYTSALD ISADGRSLIY IWKEKEREEL
DAGLYLLDLL SAELAPLRLS CERDCGYRDR DVAFSPDGKW IAIARRYGTI SEDIFIRNIV
TGDEVRLTQG LEDIRGLSWD QDSQKLVFST ENSGFRDGFI VDIESKEMLP LSISGFSYPK
FIPHRDEVVY SNYIKDFSVA YLALDQDIPS TVFPISQAEY SYRNPDYSSK AKRIAYVSNE
TGFNEIWTSD HNGLNRVQLT DLKRRVAYPA WSHDGSKIAF LAPDDKNEGN KIHIVDLSSG
GISILPSRSS DHRRPSWAWG DEWVLSSTND GLTAFSLHNH SPKHLSSIDV RLGKMTDANT
LVFTRYDEYG LWSMDISNPQ QVEPLIAIED FSESYNWVVT DKGVYFREVN AGYQLINFWS
FNTDLTTPIL KLPASSLSSF GAMSYIPGER RLLMTLSEYS KRDVIKLKHK LLH
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