| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1100 |
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| Symbol | |
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| ID | 5612102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1305410 |
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| End bp | 1308178 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931949 |
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| Product | outer membrane receptor protein |
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| Protein accession | YP_001472839 |
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| Protein GI | 157374239 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000948721 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00320832 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACCAC AGATGAAATT ATCGGCATTA ACATTAGCCA TAACCATGGC GGCATTGGCA
CCTTCGTCGC TACTCGCTGC AGAAGATTCT GCCGCGACAG ACGGCGCAAA CAGTAAGATT
GAGAAAATTG AGGTAACGGG TTCCCGTATT AAACGTGCCG ACTTTGAAGG GGTTGCTCCA
GTCACGGTGA TCACAGCAGA TGATATTGCC AATAGTGGCC TATCTTCTAT CTCTGAAGTC
CTTCAATCTT CAGTGGCAAA TAACGGTGGT TCACTTAACG GTGACAGCGA TGGTTTTACC
GATAGCGCAA GCTCAGTTAA CCTTCGCGGT ATGGGCGCCA ACAGAACTCT GGTACTTATT
AATGGCCGCC GCCAAGCCTC ATTCCCTTCT GCTGCTGGTG GTACTTCAAA CTTCGTCGAT
ACCTCTGATA TTCCAACGGC TGCAGTTGAA CGTATCGAAA TCCTTACCGG TGGTGCATCG
GCGATTTACG GTTCAGATGC TGTCGGTGGT GTAGTAAACA TCATCCTCAA GAAGCAATAT
GATGGTGCTA AGGTTGAAGC GAAATACTCA GATACTACCC AAGGTGGTGG TGAGCAGTTT
GATCTATCTT ACCTGCAGGG TATCAACACT GAAAACAGTC AATCTTTGAT CATGCTCGAA
TACAAGCAGG TTGGCGCAAT CCAGACCTAT CAGCGTGACG ATCTATACAG CCCTGCCTAT
TATGAAGATG AGGATGGCGA CATTCGTTGG GGTTCTGGAC CATACGGTGA CTCATTTCCA
TCAAGCTGGG CATCTTGGAT CAGAGATTAC TCAAAAGTTT ATACCGATGA TAAGTACAGC
CCTGTCGATG AAGCTCAGTG TACTAATCTG TTCGGTGACA AGGGGGTCTA TGTAGAAGCT
GGTACTTATG ATTGTTACTA CGATAAGTAT GCCGACCGCG GTCTACAGTC AGAATATGAC
AGAATCAACC TGGTTGTTAA CAGCACTTAC GATCTTAACG ATGATTGGCA GATTTATGGA
ATGCTTAATG CCTCCTATAA AGAGAGCACT AAGTATAAAG ATGAGAAAGG TTTCGGGGAT
TACTTCTATC AAGATGAAGC CACAGGTGCA ATGAGTTACG ACAAGTACGA ATTTGAAGAT
TACAACAAAT TCCAGATGCG TCGTCGTATG GAGGAGTACC CTGGGCCACG TACCTATGAC
ACCCAGAACA CTAAAGCCTC TCTGGCTTTT GGTGCTAACG GTACCATTGG TGATTACGAA
CTGGATATCT CCTGGTCTAG CGGCTACGCA CTGTATGAGA AGCAGAACCA TCATATGGTC
AGAGCTGATG CCCTACTCGG TATGGTGACT TTCGATCCTA ATGACACAGA TGCTTCTAAG
TGGTACCCAA ATAACCAGTT AACCACAGAG CAAGCTGAAG CACTTATTGG TGACTCAACG
AAGAAATCGG ACTCTAGCAT GCACCAGTTA CAGGCCGTAT TTACCGGTGA CTTGATGGAG
CTGGAAGCGG GTACTGTTGG CTTTGCAACT ACAGCAGAGT GGGCACGTGA AAGCTATGAA
GATACCTTAG ATGAAACCAC CATGAACGGC GGTTTTATCG GTATGGGTGG TACGGGTGGT
AAGGGTGACC GTGACCGTGT TGCTGTTGCA GGTGAATTGC AGGTCCCACT ACTTGCCGAT
ATGACAGGTG TTAAGTCATT AGACCTATCT GCTGCACTTC GTTATGACCA ATACCTGGAT
GATTCAGATG TGGGCGGAGC AACGACTCCT CAGGTTGGCC TAAGTTACCG ACCAATTGAT
GAGGTAATGG TACGTGCTAA CTGGGGTAAG AGTTTCCGAG CGCCAGATAT GCATCGCCTC
TATTCTGGAT TAACAAGAAG TTTTGGTGGA ACAGAGTATC CACATCCAAC AATACCAGAT
GAGATCTATG AAGATGATTA CGATGGCTTC AACTCTGGAA ACCTAAACCT TACCGAGGAG
AAGGGTGAAT TCTGGAACCT AGGCTTTGTT GCCAATGTTA CGGATAATGC AGATCTAACA
TTAGACTGGT GGAACATCGA ACTTGAGGGT GCGGTTAAGA CAATTTCAAC CGATGAGATG
CTAGAAGACC CGAGCTATAT CAAGAATGGT CAATATACAG ATTGCGCAAC AATGCCAGAA
GTGGGTTACC TGACTGAGTT TGATGATGAC GGCATCGAAA ACATCGCCTG TATGCGCAAA
GGTCCTATTA ATAGTGCCTA TGAAGCATCG GAAGGTATCG ATGCCAGCTT CAACTACCTG
TTCCCGGAAA CTGCTGCCGG TGAGTTTAAG TTCAAGCTTG CAGCCTCTTA CCTACTCAAG
AAGGAGTATC AAGAGAGAGA AGGTGATGAG ATAGAGGAGC AGACTGAGAC GGATTATTTC
CCTAAGTGGA AGGGTAATGC CAGCCTGAGC TGGAGCTATG AAGACTTCAC GGCAACCATC
GCATACTACT ACACTGGAGA GGCCGTAGGT ACCGATCTAT TTGAATACGT TGATGAAAAT
GGTGATGATG TAGAGTCGAT GGAGACTGAT ACCTTAGATC CATATCAGAT CATCAACATC
ACGCTATCTT ACTACGCACC ATGGGAAGGT AAGTTCACCG CAGGTGTTAA AAACCTGACC
GATGAGATGC CTCCACTTTA CGATATACGT AACGACGAGC ACAACGACTG GCCATACTAT
CAAGATGATA ACAGCAGTTA CTCTGCCAAA GGTCGTAGCC TGTTCTTGGG TTACTCACAG
AAGTTCTAA
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| Protein sequence | MKPQMKLSAL TLAITMAALA PSSLLAAEDS AATDGANSKI EKIEVTGSRI KRADFEGVAP
VTVITADDIA NSGLSSISEV LQSSVANNGG SLNGDSDGFT DSASSVNLRG MGANRTLVLI
NGRRQASFPS AAGGTSNFVD TSDIPTAAVE RIEILTGGAS AIYGSDAVGG VVNIILKKQY
DGAKVEAKYS DTTQGGGEQF DLSYLQGINT ENSQSLIMLE YKQVGAIQTY QRDDLYSPAY
YEDEDGDIRW GSGPYGDSFP SSWASWIRDY SKVYTDDKYS PVDEAQCTNL FGDKGVYVEA
GTYDCYYDKY ADRGLQSEYD RINLVVNSTY DLNDDWQIYG MLNASYKEST KYKDEKGFGD
YFYQDEATGA MSYDKYEFED YNKFQMRRRM EEYPGPRTYD TQNTKASLAF GANGTIGDYE
LDISWSSGYA LYEKQNHHMV RADALLGMVT FDPNDTDASK WYPNNQLTTE QAEALIGDST
KKSDSSMHQL QAVFTGDLME LEAGTVGFAT TAEWARESYE DTLDETTMNG GFIGMGGTGG
KGDRDRVAVA GELQVPLLAD MTGVKSLDLS AALRYDQYLD DSDVGGATTP QVGLSYRPID
EVMVRANWGK SFRAPDMHRL YSGLTRSFGG TEYPHPTIPD EIYEDDYDGF NSGNLNLTEE
KGEFWNLGFV ANVTDNADLT LDWWNIELEG AVKTISTDEM LEDPSYIKNG QYTDCATMPE
VGYLTEFDDD GIENIACMRK GPINSAYEAS EGIDASFNYL FPETAAGEFK FKLAASYLLK
KEYQEREGDE IEEQTETDYF PKWKGNASLS WSYEDFTATI AYYYTGEAVG TDLFEYVDEN
GDDVESMETD TLDPYQIINI TLSYYAPWEG KFTAGVKNLT DEMPPLYDIR NDEHNDWPYY
QDDNSSYSAK GRSLFLGYSQ KF
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