| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1093 |
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| Symbol | |
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| ID | 5612179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1296854 |
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| End bp | 1298563 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931942 |
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| Product | Cl-channel, voltage-gated family protein |
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| Protein accession | YP_001472832 |
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| Protein GI | 157374232 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0038] Chloride channel protein EriC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00228292 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00554461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCGACACA GATTAAAGAA GACACATACC CAATGGTTGA GATACCAGAG AACGGAACTT
AAAGATACTC TTTCTCAAGC TAAGATCAGT CTGCAACTCT CTCTGCTCGC TCTGTTATTT
GCCCTGATGG CCTCGGGTGT GATCTTGCTG TTCCGGCTAT TACTTATCTG GATAAACACC
TACACAGAAA CCAGTGAGCT GGATTTTACT GAGATCATCG ACGACTGGCG AGTGTTATTA
CCACTGATTG GCTCAATTTT AATCTGGTTA GTCGCACGAA TGGGATCTAA ACGCTATAGG
CGGATGGGTA TCGCCTATGT TTTACACAGA ATTAAACTTC ACCACGGTAA GTTGCCTCTG
CAGTCGGCAC CCAGTCAGTT TTTCCAGGCC CTGTTCGCCC TGGTCACTAA CTTTTCTGTC
GGCCGGGAAG GCCCGGTGAT CCATTTAGGC GCTGTTACCG CCAGCGTATT AGCTGAAAAA
TTTAAACTGC CGGATAACAG TGTTCGTATC ATGTGTGCCA GTGGTATCGC TGCAGGTATC
GCCGCCACCT TCAATACACC ACTTGCGGCA GTCATCTTCG TTTTCGAGGT GATCTTGCGC
GAGTACAAGG TTCACTATTT CTTTCCCATC ATACTCGCCG CTATCTGCGG GGCAGTATCA
TCGCAACTCG TCTTTGGCAA CATTCACGAA TACGAGCAGA TTGGCGTTAT CCATATTCCG
CTCTCCCAAT ACCCGGTTCT GGCAATAAGT GGTGTGCTTT TAGGTTGTGT GGCCGCCCTA
TTTAACTTCT CTTTGCTCAA GGTTACGGCC ACGGGTCAAC ACTGGCCACT GCTAAACCGG
GTATTACTGG CGGGGGTGAT CACCACTATC GTCGGCATCT TTCTTCCCGA GTCTCTTGGC
AGTGGTGAGC TTGCCATCGA ACAAGCGATA AGCGAGCATC CCAGCATTCT ATTTTTAATC
GCGCTGTTGA TTGGAAAAAT CATCGCCACC ATCGCCGCCA TAGGCCTCGG GATCCCCGGT
GGTATCATCG GACCTATTTT TGGCATAGGT GCACTGCTTG GCGCCATTTT GGCCCTCGCC
AGCGCGGCGA TATTCCCGTC TGTCGCTTCC TATATCGGCC TCTATACCAT CATAGGTATG
ACCGCAATCA TGGGGGTCTG TCTCAGCGCA CCACTTGCAG CCCTGGTCGC CCTGCTCGAG
ATGACGAACA ACCCCTCTAT CATATTGCCG GCCATGTTCG TTAGCATCCC GGCCTTTCTC
ATCGCTCATC AAGGCTTTAA GTCAAAATCA CTCTTCCTGC AACAGCTAGA GATCATGGGC
TTAGGCTATA AGGTCTCCCC CCTCGAACTT GGATTACAGA AACGTGGCGT CAGGGCGTTG
ATGGATAAGA GGCTGGTTAT CGTAAAGGAT GACGATGAAC TGTTACTCGA GGTGCTCAAG
CGCGCCGCGG GTCGTTCAGT ATTAGTCCGG AATGCACAAG GTCAAATGGA GATGCTACAA
CTCGAGATGC AACTTCATGA TCATGAGAGC TCCCTCACCC GGCATCCTAT CGAGGGACTC
CCCGATACGG CGACGCTGAA TGAAGTCTAC GGCATTCTCT CACGGGATCG ACGCGGTGAG
GTATATGTCT ATCAAGACAA AAGCGATAAT ATCGTCGGGG TGATCAGCTG GGCATCTTTG
CAACAAGAGA TACGTTCCGG ACAGGTTTGA
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| Protein sequence | MRHRLKKTHT QWLRYQRTEL KDTLSQAKIS LQLSLLALLF ALMASGVILL FRLLLIWINT
YTETSELDFT EIIDDWRVLL PLIGSILIWL VARMGSKRYR RMGIAYVLHR IKLHHGKLPL
QSAPSQFFQA LFALVTNFSV GREGPVIHLG AVTASVLAEK FKLPDNSVRI MCASGIAAGI
AATFNTPLAA VIFVFEVILR EYKVHYFFPI ILAAICGAVS SQLVFGNIHE YEQIGVIHIP
LSQYPVLAIS GVLLGCVAAL FNFSLLKVTA TGQHWPLLNR VLLAGVITTI VGIFLPESLG
SGELAIEQAI SEHPSILFLI ALLIGKIIAT IAAIGLGIPG GIIGPIFGIG ALLGAILALA
SAAIFPSVAS YIGLYTIIGM TAIMGVCLSA PLAALVALLE MTNNPSIILP AMFVSIPAFL
IAHQGFKSKS LFLQQLEIMG LGYKVSPLEL GLQKRGVRAL MDKRLVIVKD DDELLLEVLK
RAAGRSVLVR NAQGQMEMLQ LEMQLHDHES SLTRHPIEGL PDTATLNEVY GILSRDRRGE
VYVYQDKSDN IVGVISWASL QQEIRSGQV
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