| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1091 |
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| Symbol | aspA |
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| ID | 5612177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1294091 |
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| End bp | 1295548 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931940 |
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| Product | aspartate ammonia-lyase |
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| Protein accession | YP_001472830 |
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| Protein GI | 157374230 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1027] Aspartate ammonia-lyase |
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| TIGRFAM ID | [TIGR00839] aspartate ammonia-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.548259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0187146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGTAA TGTATCCAGA TCTCACCGAA AACACGCGCT CAGAAACCGA TCTATTGGGG
AGTAAACCTA TCCCCGGTGA CGCTTATTAT GGGATCCATA CTTTAAGGGC GATGGAGAAC
TTCGAGATCA GCAATGAAAA GATTGGTGAT TGTGTCGAGT TTGTCCGTGG CATGGTAAAG
ACTAAAAAGG CGGCCGCGAT GGCCAATGGG CATCTGGGTA CTATTTCTCA AGATATTGCC
GCTGCCATTG TCAGAGCCTG CGACACCCTG CTGGCCAGTG ACCGTTTTTA CGATCAATTT
CCCATCGATG CTTTTCAGGG CGGCGCCGGG ACATCGGTGA ATATGAACAC CAACGAAGTG
ATCGCCAACA TTGCATTGGA GCAGATGGGG CATGTGAAGG GAGATTATCA ACATATTAAC
CCTAACGATC ATGTGAACAA GAGTCAGAGT ACTAACGATG CCTACCCTAC AGGCTTTCGT
GTTGCCCTGT TTGAACGGAC TAATACTGTG TTATCAGCGC TCACTCTGCT CATTGAGGCT
TTTCTGGCTA AGTCTGAAGA GTTCAGTGAT GTACTTAAGA TGGGCCGTAC TCAGTTGCAG
GATGCTGTCC CTATGACTCT GGGGCAGGAG TTTCGTGCAT TTGGTATCAC GTTGCGAGAA
GAGATTAAGA GCATCAAACG TTGTCAGGAG TTGCTGCTGG AGATTAACTT AGGCGCTACG
GCTATTGGCA CCGGCTTGAA TACACCCGCC GGATATTCTG AGTTGGCTAT CGAAAAACTG
GCCGAGATCA CGGGCCATCC ATTTACTCCT GCTGAAGACT TAGTCGAAGC GACATCAGAT
TGTGGCGCTT ATGTGATGCT GTCCAGCTCG TTGAAGCGAT TCGCGGTCAA GTTATCTAAG
ATCTGTAATG ATCTTCGCCT CTTATCCTCC GGGCCACGCA CCGGCTTAAA TGAGATTAAC
TTGCCAGAGA TGCAGGCCGG TTCATCTATC ATGCCAGCTA AGGTGAATCC GGTTATCCCT
GAGGTGGTGA ATCAAGTGGC CTTCAAGGTA TGCGGTAACG ATCTCACCGT CACCATGGCG
GCTGAGGCGG GACAACTGCA GTTGAACGTG ATGGAGCCCG TTATCGGTCA ATCTCTGTTT
GAGTCCTTGT CACTGCTGGA AAATGCCTGT GTGACGTTAA AAGGTAAGTG TATCGAAGGG
ATCACCGCTA ACCGTCAGGT GTGTCAGGAT TTCGTGCTTA ACTCCATCGG GATTATCACC
TATCTGAATC CATTTATTGG TCATCATGAG GGAGATATCA TAGGTAAGAT CTGCGCCGAA
ACAGGCAAGA GTGTGCGTGA GGTCGTATTA GAGCGCGGCT TGTTATCACC GGAGCAGCTC
GATGAGATCT TCTCCATAGA AAATCTGATG AACCCTAAGT ATAAGGCGCA GCGCTTTGCA
CAGGTTACAT CCGGGTGA
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| Protein sequence | MTVMYPDLTE NTRSETDLLG SKPIPGDAYY GIHTLRAMEN FEISNEKIGD CVEFVRGMVK
TKKAAAMANG HLGTISQDIA AAIVRACDTL LASDRFYDQF PIDAFQGGAG TSVNMNTNEV
IANIALEQMG HVKGDYQHIN PNDHVNKSQS TNDAYPTGFR VALFERTNTV LSALTLLIEA
FLAKSEEFSD VLKMGRTQLQ DAVPMTLGQE FRAFGITLRE EIKSIKRCQE LLLEINLGAT
AIGTGLNTPA GYSELAIEKL AEITGHPFTP AEDLVEATSD CGAYVMLSSS LKRFAVKLSK
ICNDLRLLSS GPRTGLNEIN LPEMQAGSSI MPAKVNPVIP EVVNQVAFKV CGNDLTVTMA
AEAGQLQLNV MEPVIGQSLF ESLSLLENAC VTLKGKCIEG ITANRQVCQD FVLNSIGIIT
YLNPFIGHHE GDIIGKICAE TGKSVREVVL ERGLLSPEQL DEIFSIENLM NPKYKAQRFA
QVTSG
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