Gene Ssed_1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1083 
Symbol 
ID5612601 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1284101 
End bp1284367 
Gene Length267 bp 
Protein Length88 aa 
Translation table11 
GC content45% 
IMG OID640931932 
Productmajor outer membrane lipoprotein, putative 
Protein accessionYP_001472822 
Protein GI157374222 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.93694e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0136333 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAA AAGTACTCAT GATTGCTGGT GTAGCAATGA CTGCCCTTCT AGGTGGCTGT 
GCAAACACTA CTGCTCTTGA AGAAAGCGTA GCTAACCTTG GCAACAAAGT TGACCAACTA
TCATCTGAAG TTAGCTCTCT GAAGTCAGAG CAAGGTGCTC TTTCTGCAGA CGTTAAAGAT
GCAAAAGCAG CTGCTATGGA CGCACAAGCA GAAGCTAAGC GCGCAAATGA TCGTCTTGAC
AACGTTGCCT CTTCTTACAA GAAGTAA
 
Protein sequence
MNKKVLMIAG VAMTALLGGC ANTTALEESV ANLGNKVDQL SSEVSSLKSE QGALSADVKD 
AKAAAMDAQA EAKRANDRLD NVASSYKK