Gene Ssed_1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1082 
Symbol 
ID5612902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1282834 
End bp1283835 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content49% 
IMG OID640931931 
ProductErfK/YbiS/YcfS/YnhG family protein 
Protein accessionYP_001472821 
Protein GI157374221 
COG category[S] Function unknown 
COG ID[COG1376] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.31634e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0168034 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGAG TAATGATGTG GTTCATCTTA AGCTTAATTC CTGCCGTGAC CCTGGCTAAT 
GTGTATCCAC TGCCAGAGAA GGGAAGCCGT CTTATCGGTG AAGTCCAGGA ACATGTGGTA
GCGCAGGGCG ACTATTTTCA AACCATAGCG AAAGAATACA ATATAGGTAT TCTTGAGTTG
ATGGAGACGA ACCCGGGTGT CGATCCGTTT CTTCCTACTG TGGGCTCAAA GCTTGTCATC
CCAACTCAGA TGTTGCTTCC CGATGTTCCC AGAAAAGGGA TAGTGATTAA CCTGCCAGAA
CTTCGCCTCT ATTATTTTCC GACAAATGGT AAAGAGGTGC ATGTTTTCCC TGTGGGGATT
GGGCGTGTCG GTCGTGAAAC CCCGGAGATG GTGACTAAGA TTAAGTCGAG GATCCCTAAC
CCTAGCTGGA CGCCACCGGC AAGTATACGT CGTGACCATC TCGCAGAGCG TGGCGAGGTG
CTACCGCGCG TCGTGCCTGC CGGACCCGAC AATCCATTAG GTAAATATGC TATGCAGCTT
TCTCATGGAG ACGGCAGTTA CCTCATTCAT GGTACCAATA AAGATTTTGG TGTCGGCATG
CGTGTGAGCT CCGGTTGTGT CCGTTTGAAC CCTGACGATA TCGAATGGTT GTTCCATCAG
GCTAAATACG GTGATTCGGT GAGAGTGATC AATGAAACCG TTAAGATCTC CTCTGAGCCT
GATGGCAGTC AGATCATCGA GGTGCATTCC GCTCTGTCTA AATCTGAGTC AGATGTCGAG
CGGGAGAAGG TCGTTTCAAT GAAGGCCGGA GTAGTAAAAT TTATCAGCCA GGAAGGGATT
GATAGCTTTA AGGCTAATGA TGCGCTATTG ACTCAAAACG GGTTGCCGGT GAATATCCGC
ACAATGGATG ATTCAGACAG TATCACACTA TCCTCGGGCA TTGAGTCTGC GGCAAGTTCT
GAATCTGTAA CAAATGAGAG TGAGCCCTCA GCCAGCTTAT AG
 
Protein sequence
MMRVMMWFIL SLIPAVTLAN VYPLPEKGSR LIGEVQEHVV AQGDYFQTIA KEYNIGILEL 
METNPGVDPF LPTVGSKLVI PTQMLLPDVP RKGIVINLPE LRLYYFPTNG KEVHVFPVGI
GRVGRETPEM VTKIKSRIPN PSWTPPASIR RDHLAERGEV LPRVVPAGPD NPLGKYAMQL
SHGDGSYLIH GTNKDFGVGM RVSSGCVRLN PDDIEWLFHQ AKYGDSVRVI NETVKISSEP
DGSQIIEVHS ALSKSESDVE REKVVSMKAG VVKFISQEGI DSFKANDALL TQNGLPVNIR
TMDDSDSITL SSGIESAASS ESVTNESEPS ASL