Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1081 |
Symbol | |
ID | 5612901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1281820 |
End bp | 1282716 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931930 |
Product | rRNA (guanine-N(1)-)-methyltransferase |
Protein accession | YP_001472820 |
Protein GI | 157374220 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00250599 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0321173 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGTA TCTATTTATG CCCTGTGTGT GACCAACCTC TGTTAATTCA CGAGGCATCT CAGGGATTGC ATTGCTGTAA GAAACACCAT TTTGATAAAA GTGAAAATGG ATATTGGATT TTTAGTCAGG CCAAGAAACC GCAGATCGAC TCCAGACAGA TAATGCGTGC CAAGCGGTTC CTGCTCGAGT CGGGAATATT TCAGCCGATT GTAGACAAGG TTGAGGCGAT GATCACCGCA TCAGACCTGA CCGAAGGAGA GGTTAGTTAC CTCGACTACG ATTGTGGTGA AGGTTATTAC CTGCGTGAGA TTAAAGCTAA GCTTGCTCAG AGTGTCGAAG GCAAAAGTAT TGCCAATAGA CTGAATACCT ATGGGATCAC AGAAGCTGAG AATGCACTTT TCTCTGCCGC TAAGATTCAG TCTGAGGCGA AAGCCGAACT CAATGGCGAT GACGATATAG TTGACTGCGA TACAGAGTCG GATACGACCT TTATCGTCAG TACCTTGAAG AAGCTGCCTC TTGCCAGTGA GAGTTTAGAT CTCGTGACTC TGATTGATAA GCAGCTCAAA GGTAAAGAGT TGATTAGGGT ATTAAAACCT GGCGGCCTCT TGATTCAGGT CTCTCCGGCT CCTCGTCATT TATGGCAGAT AAAAGAATAT ATCTATCCTG ATATGAAGGA GAAAGCGCTT AATACCCCAC AATCGAGTGA ACTGGAACTG CTGCAAACCG AGCGAGCCAG CTTTAAATTG GCTATCGATG GCAACCAGGC TCTAGCGCTA TTGGAGATGA CGCCTTATGC GTGGCGAGCC AATGATAAGG TGCGCAAGCA GATAGCGGAT AACAGATTCG AGGCCTTAGA GATCGACTTT GTTGTCACCC TGTCGAAGAA GAAATAA
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Protein sequence | MKSIYLCPVC DQPLLIHEAS QGLHCCKKHH FDKSENGYWI FSQAKKPQID SRQIMRAKRF LLESGIFQPI VDKVEAMITA SDLTEGEVSY LDYDCGEGYY LREIKAKLAQ SVEGKSIANR LNTYGITEAE NALFSAAKIQ SEAKAELNGD DDIVDCDTES DTTFIVSTLK KLPLASESLD LVTLIDKQLK GKELIRVLKP GGLLIQVSPA PRHLWQIKEY IYPDMKEKAL NTPQSSELEL LQTERASFKL AIDGNQALAL LEMTPYAWRA NDKVRKQIAD NRFEALEIDF VVTLSKKK
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