| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1080 |
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| Symbol | |
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| ID | 5612900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1280961 |
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| End bp | 1281761 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931929 |
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| Product | undecaprenyl pyrophosphate phosphatase |
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| Protein accession | YP_001472819 |
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| Protein GI | 157374219 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1968] Uncharacterized bacitracin resistance protein |
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| TIGRFAM ID | [TIGR00753] undecaprenyl-diphosphatase UppP |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.025115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0318175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATACCT TTCAGGTCAT CATCTTGGCC CTTATTCAGG GCTTGACCGA GTTTTTACCC
ATTTCCAGCT CTGCACACCT CATTTTACCG TCGCAACTTC TGGGCTGGGA AGATCAAGGT
TTGTCATTCG ATGTAGCGGT AAATACAGGC TCCCTGCTTG CCGTTGTGAT GTATTTCAGG
CATGAGCTGT GGTCTATGTT CAAAGCCTGG ACTGACAGTA TTATCACACG AAAGCAGACC
GATGAGAGCA AACTTTCCTG GTGGATCATT TTAGCGACAA TACCGGCCGT TATTGTCGGG
TTTACCGCGA AAGACTTCAT TGAAACTTAC TTAAGAAATA CCGCTGTCAT AGCGACAACG
ACAATAGTGT TCGGCTTGCT TCTCTGGTGG GCGGATAGGA TGTTCAGGCC GGGGTTTACT
GAATTTCAGG TCGGTTGGAA AAAGGCATTG GTGATAGGTG TCGCCCAAGC TATGGCGCTA
ATTCCGGGAA CATCTCGTTC GGGGGCTACT ATTACCGCCG CATTAATGCT GGGGCTCAGT
CGTGAAGCTG CCGCCCGATT TTCATTTTTG ATGTCTGTCC CGGTCAGTTT AGGTGCGGCT
ATATTGGTGA CTAAAGATCT GATATCCAGT GGTCAGACGA TAGATTATCA GGCGCTGTCT
CTGGGTATTA TCGTGTCATT CGTGGCGGCC TATACTTGTA TTCATCTGTT TTTGAAACTT
ATCAGCCGCA TGGGGATGAC GCCTTTCGTC ATCTATCGTT TGGCATTAGG CGCAATCCTG
TGTGCATTTA TGTTTGCCTA A
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| Protein sequence | MDTFQVIILA LIQGLTEFLP ISSSAHLILP SQLLGWEDQG LSFDVAVNTG SLLAVVMYFR
HELWSMFKAW TDSIITRKQT DESKLSWWII LATIPAVIVG FTAKDFIETY LRNTAVIATT
TIVFGLLLWW ADRMFRPGFT EFQVGWKKAL VIGVAQAMAL IPGTSRSGAT ITAALMLGLS
REAAARFSFL MSVPVSLGAA ILVTKDLISS GQTIDYQALS LGIIVSFVAA YTCIHLFLKL
ISRMGMTPFV IYRLALGAIL CAFMFA
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