| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1076 |
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| Symbol | |
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| ID | 5612997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1277942 |
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| End bp | 1278955 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931925 |
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| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
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| Protein accession | YP_001472815 |
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| Protein GI | 157374215 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
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| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0611829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.23684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGGTTT TAGGTATTGA AACATCTTGC GATGAAACTG GAGTTGCTGT CTATGATGAC
GAGCAGGGCT TGTTGTCTCA TACATTATAT AGTCAGGTAA AGCTTCATGC CGATTACGGC
GGAGTGGTCC CTGAACTGGC TTCCAGAGAT CATGTAAGAA AGATAGTTCC ATTGGTTAAG
CAAGCGCTGG CCGATGCAAA TTGTACCTTA GATGATATCG ATGGTGTTGC TTATACCAAG
GGGCCTGGAT TGGTTGGTGC TCTACTCGTC GGGGCTTGCA TGGGAAGAGC ATTAGCTTAC
TCCTGGGGGA AACCAGCTGT CGGGGTGCAT CATATGGAAG GGCACTTGTT AGCCCCAATG
CTTGAAGATG ATGTGCCTGA GTTTCCTTTC TTAGCGCTGC TTGTTTCCGG TGGTCACTCG
ATGCTGGTTG GTGTAGAGGG AATAGGTCAA TATGAAGTGC TTGGTGAGTC TGTCGATGAC
GCTGCCGGCG AAGCATTCGA CAAAACTGCA AAATTGATGG GACTCGATTA TCCGGGCGGG
CCGCGTTTGT CAAAGCTCGC AGCAAAGGGA GAGACAGGCC ATTATCGTTT CCCTCGTCCC
ATGACCGACA GACCCGGACT CGATTTCAGT TTCTCGGGGC TTAAGACATT TGCGGCTAAC
ACCATTGCCA AAGAACCCGA TGATGAGCAG ACGCGCGCTA ACATTGCCCG TGCCTTTGAA
GAGGCTGTCG TAGATACTCT CTCGATTAAG TGTCGTCGCG CTCTGAAACA GACGGGTTAT
AAGCGTTTGG TCGTTGCCGG AGGTGTGAGC GCCAATACCC GTTTACGTAC GACCTTAGCC
GAGACCATGC AAGCTCAGGG CGGCCAAGTC TACTATCCTC GCGGTGAGTT CTGTACCGAT
AACGGTGCCA TGATTGCTTA TGCAGGTTTA CAAAGACTTA AGGCTGGTCA TATAGAAGAC
TTAGGCGTAA AAGGTGAACC TCGTTGGCCA CTGGATACGC TTCCGGCGGT ATAA
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| Protein sequence | MRVLGIETSC DETGVAVYDD EQGLLSHTLY SQVKLHADYG GVVPELASRD HVRKIVPLVK
QALADANCTL DDIDGVAYTK GPGLVGALLV GACMGRALAY SWGKPAVGVH HMEGHLLAPM
LEDDVPEFPF LALLVSGGHS MLVGVEGIGQ YEVLGESVDD AAGEAFDKTA KLMGLDYPGG
PRLSKLAAKG ETGHYRFPRP MTDRPGLDFS FSGLKTFAAN TIAKEPDDEQ TRANIARAFE
EAVVDTLSIK CRRALKQTGY KRLVVAGGVS ANTRLRTTLA ETMQAQGGQV YYPRGEFCTD
NGAMIAYAGL QRLKAGHIED LGVKGEPRWP LDTLPAV
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