Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1073 |
Symbol | |
ID | 5613022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1275068 |
End bp | 1276789 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640931922 |
Product | DNA primase |
Protein accession | YP_001472812 |
Protein GI | 157374212 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.096623 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGATAC CTCGTGATTT TATCAATGAG CTAGTAGCTC GAATCGATAT TGTCGATCTT ATCGACGCAA AAGTACCCCT GAAAAAGGCG GGTAAGAATC ATTCTGCCTG TTGTCCGTTT CACAGCGAAA AATCGCCCTC TTTTACCGTT AGTCGAGATA AGCAGTTTTA TCATTGCTTC GGCTGTGGTG CCCATGGAAA TGTCATCGAC TTTGTCATGG AGTACGACCG ACTCGATTTT ATCGATGCGA TTGAAGATCT CGCTGGCCAA TTGGGCGTTG AAGTCCCAAG AGAGCAAGGT ACTGGTCCAA AACGCGATGA AGGTTTAAGT CGCGACCTCT ATCAGTTAAT GGAAGAGGCA AGCCTCTATT TTCAGAACCA GTTAAGACAA CATAATGACA AACAAAAGGT CCTCGAATAT CTAACACATC GCGGACTATC CAATGAAGTT GTTGAACACT TCAATATTGG ATTTGCTCCC GATGGATGGG ATGGTTTATT AAGCCGTTAC CGTCAAAATC AGGATGCACA AGACAAATTA CTTACTGCCG GAATGGTGAT TGAGAACGAT AATGGCAAAC GTTACGATAG ATTTCGTGAC AGGCTTATGT TCCCCATTCG TGACAGAAGA GGCCGGGTTA TCGGTTTCGG TGGCCGAGTT TTAGGCGATG GCACACCAAA GTACTTGAAT TCTCCGGAAA CGCCCATATT TCATAAGGGC AATGAGCTAT ATGGACTCTA TGAGCTAAAA CAACGCCATA GAGATCCCAA GCAAGTACTC ATTGTTGAAG GCTATATGGA TGTGGTGGCA CTGGCACAAT TTGGCGTCGA CTATGCGGTT GCTTCGCTGG GTACCTCAAC CACAGCAGAG CAATTTCAGC TACTACTACG CAGTGCTAAA GAAGTGATCT GTTGTTATGA CGGAGATAAA GCGGGCGTCG AAGCGGCGTG GCGTGCTCTT GAAACGGCAT TACCCTTGCT TAAGCCAGGT AATCAAGTCA AATTTATGTT CCTACCTGAA GGTGAAGACC CGGATACTAT GGTTCGTCAG GTAGGCAAAG AAGTATTCGA AAGTCAGGTT AATGATGCGC AGGAACTACC CGAGTTTCTT TTTGAAACCT TAGCCAAGCG ATATGGCTCA GATAAAGGGA CGTTGGCCAA GCAAGCCATT ACTCTGACAG AGAAGATACA AGATACTGTT CTACAAAGTT TATTGCTCGA AAGCTTAGCC TATAAATTGG GTATGAACAG TGCTGAAGAG CTAAAGCGGA AACTTGGTTT TTCTTCAAAA GAACAAGTAA AGCCTCTTCA AAAGAAAGCG TTAAAAGGAC GTGGAACCCC ATTGCGATTA GCCATCGCAT TGCTGGTACA ACATCCTAGT CTTGGTGAAG GACTGCCAGA GCAACCAGCG CTTAAACACC TAAAGATGGC CGGCATTGAA CTGCTGATCC TCTTGTTAGA CGAAACTCGT GTGAAAGTGA AACACAGCGC ACAACTACTT GAACAGTTCA GGGGCGACAA ACAGCTCAGC ACCCTGAAAA AACTGACCCA ATGGGATCAT CAAGTGGCGG ATGAAAACTT GCAGCAAGAG TTTAGAAAGA CCCTGATTTG GTTGAACAAT CAATATATTG AACAACGTTA TCAGGAGTTG AGTCTAAAAC AGAACCATAC TAAAGAAGAA AGGATTCAGC TCACTAAGCT AATCTCAGTC ATAAAAGGCT AA
|
Protein sequence | MAIPRDFINE LVARIDIVDL IDAKVPLKKA GKNHSACCPF HSEKSPSFTV SRDKQFYHCF GCGAHGNVID FVMEYDRLDF IDAIEDLAGQ LGVEVPREQG TGPKRDEGLS RDLYQLMEEA SLYFQNQLRQ HNDKQKVLEY LTHRGLSNEV VEHFNIGFAP DGWDGLLSRY RQNQDAQDKL LTAGMVIEND NGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG NELYGLYELK QRHRDPKQVL IVEGYMDVVA LAQFGVDYAV ASLGTSTTAE QFQLLLRSAK EVICCYDGDK AGVEAAWRAL ETALPLLKPG NQVKFMFLPE GEDPDTMVRQ VGKEVFESQV NDAQELPEFL FETLAKRYGS DKGTLAKQAI TLTEKIQDTV LQSLLLESLA YKLGMNSAEE LKRKLGFSSK EQVKPLQKKA LKGRGTPLRL AIALLVQHPS LGEGLPEQPA LKHLKMAGIE LLILLLDETR VKVKHSAQLL EQFRGDKQLS TLKKLTQWDH QVADENLQQE FRKTLIWLNN QYIEQRYQEL SLKQNHTKEE RIQLTKLISV IKG
|
| |