| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1065 |
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| Symbol | |
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| ID | 5613177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1261914 |
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| End bp | 1263200 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931913 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001472804 |
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| Protein GI | 157374204 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTG TACCTCACGC AGAATCCTAT TATGCAGCTT CAGCAAACGA TAAAGTTGAA
CGTCCTCAAT TGGCAGACAA TGTTGAGGCC GATATTTGTA TCATAGGCGC CGGTTATACC
GGGTTATCGA CGGCGATACA CCTGTTGGAG CTTGGCTTTA GTGTCACAGT ACTGGAAGCC
GCGCGTATTG GTTGGGGCGC ATCGGGCCGC AACGGTGGTC AGATAGTGAA TAGCTTCAGT
CGTGATATTG ACTCGATTGA AAAAACCGTA GGTAAAGAGA GCGGCAAGTT GTTTGGCGAG
ATGGCATTTG AAGGCTCGCG CATCATCAAA GAATTGATCC ACAAGTATAA TATTCAGTGC
GATCTTAAAG AAGGTGGTGT ATTTGCTGCG ATAAACCCCA AGCAGATGGG CCATCTCGAG
GCGCAAAAAG CGCTGTGGGA GAAGCACGGC CATATGGGGC ATCTCGAGCT ACTCGATGGG
AAAGGGATCC GTTCCGTCGT CGACTCTGAG CGCTATGTCG GTGGACTGCT CGACAAGAGT
GGCGGACATA TTCACCCACT CAATCTCGCC TTAGGGGAGG CTCATGCGGT CGAGTCATTG
GGCGGCAAGA TATTTGAAGA CTCGGCGGTG ATTAAGGTCG AGCAGGGGGA TAACCCGGTC
GTACACACGG CTAAAGGTTC GGTAAAAGCT AAGTTTGTGG TGGTGGCTGG TAATGCCTAC
CTCAATGGCC TGATGCCACA ACTGCAGGCT AAGTCTATGC CTTGTGGCAC ACAGGTGGTG
ACCACTGAGC CGCTCAGTGA TGAATTGGCG GCGAGCTTGT TACCTCAGGA TTATTGTGTC
GAGGATTGTA ACTATCTGCT CGATTATTTC AGGCTGTCGG GTGATAAGCG CCTCATCTAT
GGTGGTGGGG TGGTATACGG TGCGCGGGAT CCTGCCGATA TAGAAGCCAT AATCCGCCCT
AAGATGTTGG AGACCTTCCC TCAACTTAAA GATGTGAAGA TAGATTACAC CTGGACGGGG
AATTTCCTGC TGACCCTGTC ACGCCTGCCA CAGGTGGGTC GTATTGGTGA TAACGTCTAC
TATTCACAGG GCTGCAGCGG ACATGGCGTG ACCTATACTC ATCTGGCGGG CAAAATATTG
GCCGAGGCGA TACATGGACA GGCGACCCGG TTCGATGCCT TTGCCAGCCT GCCTCATTAT
CCGTTCCCCG GCGGACATAT GTTCAAGATC CCCTTCAGTG CCATAGGTGC TTGGTACTAC
ACCATGAGGG ATAGACTGGG GATCTGA
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| Protein sequence | MSSVPHAESY YAASANDKVE RPQLADNVEA DICIIGAGYT GLSTAIHLLE LGFSVTVLEA
ARIGWGASGR NGGQIVNSFS RDIDSIEKTV GKESGKLFGE MAFEGSRIIK ELIHKYNIQC
DLKEGGVFAA INPKQMGHLE AQKALWEKHG HMGHLELLDG KGIRSVVDSE RYVGGLLDKS
GGHIHPLNLA LGEAHAVESL GGKIFEDSAV IKVEQGDNPV VHTAKGSVKA KFVVVAGNAY
LNGLMPQLQA KSMPCGTQVV TTEPLSDELA ASLLPQDYCV EDCNYLLDYF RLSGDKRLIY
GGGVVYGARD PADIEAIIRP KMLETFPQLK DVKIDYTWTG NFLLTLSRLP QVGRIGDNVY
YSQGCSGHGV TYTHLAGKIL AEAIHGQATR FDAFASLPHY PFPGGHMFKI PFSAIGAWYY
TMRDRLGI
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