Gene Ssed_1057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1057 
Symbol 
ID5612944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1252352 
End bp1253659 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content51% 
IMG OID640931905 
ProductFAD dependent oxidoreductase 
Protein accessionYP_001472796 
Protein GI157374196 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCCA AGAGTCCAGT ACACAGTGAC ATGTATCCGT CATCATACTA TTTAAACACG 
GCAAAAGAGC TCTATGAGCA TCCACAACTC AGGGAGCGAA TCGATGTGGA TGTCTGTGTC
GTCGGTGGTG GTTTCAGCGG TATTAACACG GCTATCGAAC TGGCGCAGAA AGGTTTTTCC
GTTGCACTAC TGGAAGCAAA GCGTATCGGC TGGGGAGCAT CAGGTAGAAA TGGCGGTGAG
CTTATTCGTG GTATCGGTCA TAATATTGAA CAGTTCAGAA ATGTGATTGG CGATGAAGGT
GTCAGTGCCA TAAATCAAAT GGGTTTCGAG GCGGTGGATA TCGTCAGACA ACGCGTTGCC
GAGCATAACA TCGACTGTAA CCTACAGATG GGTTATTGCG ATCTGGCCAT GCGTCCACGC
CATATGAAGG AGTTAAAGCA AGACTTCGAC GATCTTGTCT CTCAGGGACG AGGCGAAGGC
TTCACCCTGT TAGAAAAAAA GGATATGGGT CGGGTCATAG GCTCGAACTG CTATGAGGGG
GCGCTGGTCG ATATGAATAG CGGCCATCTG CACCCCTTAA ACTTAGCCCT TGGCGAAGCC
CGTGTCGCCA GGGAGCTGGG GGTAAAGATG TTTGAATACA GCGCAGCACA GAAGATTATC
AAGGGAGATA AGCCTAAAGT CATCACAGAA CATGGTGAAG TGAACTGTCA GTACTTGGTG
CTGGCGGGCA ACGCCTATAT AGGTCATCAA CTCGACGGCT ATGTCGGGGG CAAGGTACTA
CCGGCGGGCA GTTACCTGCT GGCCACCGAG CCCCTTAGTG ATGAACAGTG CAAAGATATC
ATTCCTCAGG ATATGGCCTT CGCCGATATG CGTATCGATC TCGACTACTT CCACCTGTCA
GAAGATAACC GCCTGCTTTT CGGTGGCCTG TGTACCTATT CAGGCAAAGA TCCCAAAGAT
ATCGAGGCTG CACTGCGCCC TAATCTCGAA AAGGTTTTCC CGCAGCTTAA GGGAGTCAAA
ATCGATTTCG AGTGGGGAGG CATGATAGGC ATAGGAGCCA ACAGGCTCCC TCAAATCGGC
CGTATTCCGG ATTGCCCGAA CATCATGTAT GCACAGGCCT ATTCCGGCCA TGGCGTCAAC
GCCACCCATA TGGCGGCAAA ACTCATCGCT GAAGCGTTAT CGGCCCAGGC TGGACGATTC
GATATCTTCG ATAAGATACA GCATATGACC TTCCCCGGCG GGCCAACATT CAGATCGCCC
ATGTTGGCGG CAGGGATGCT ATATCATAGG TTTTTGGATA TTTTTTGA
 
Protein sequence
MQAKSPVHSD MYPSSYYLNT AKELYEHPQL RERIDVDVCV VGGGFSGINT AIELAQKGFS 
VALLEAKRIG WGASGRNGGE LIRGIGHNIE QFRNVIGDEG VSAINQMGFE AVDIVRQRVA
EHNIDCNLQM GYCDLAMRPR HMKELKQDFD DLVSQGRGEG FTLLEKKDMG RVIGSNCYEG
ALVDMNSGHL HPLNLALGEA RVARELGVKM FEYSAAQKII KGDKPKVITE HGEVNCQYLV
LAGNAYIGHQ LDGYVGGKVL PAGSYLLATE PLSDEQCKDI IPQDMAFADM RIDLDYFHLS
EDNRLLFGGL CTYSGKDPKD IEAALRPNLE KVFPQLKGVK IDFEWGGMIG IGANRLPQIG
RIPDCPNIMY AQAYSGHGVN ATHMAAKLIA EALSAQAGRF DIFDKIQHMT FPGGPTFRSP
MLAAGMLYHR FLDIF