Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1057 |
Symbol | |
ID | 5612944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1252352 |
End bp | 1253659 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931905 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001472796 |
Protein GI | 157374196 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCCA AGAGTCCAGT ACACAGTGAC ATGTATCCGT CATCATACTA TTTAAACACG GCAAAAGAGC TCTATGAGCA TCCACAACTC AGGGAGCGAA TCGATGTGGA TGTCTGTGTC GTCGGTGGTG GTTTCAGCGG TATTAACACG GCTATCGAAC TGGCGCAGAA AGGTTTTTCC GTTGCACTAC TGGAAGCAAA GCGTATCGGC TGGGGAGCAT CAGGTAGAAA TGGCGGTGAG CTTATTCGTG GTATCGGTCA TAATATTGAA CAGTTCAGAA ATGTGATTGG CGATGAAGGT GTCAGTGCCA TAAATCAAAT GGGTTTCGAG GCGGTGGATA TCGTCAGACA ACGCGTTGCC GAGCATAACA TCGACTGTAA CCTACAGATG GGTTATTGCG ATCTGGCCAT GCGTCCACGC CATATGAAGG AGTTAAAGCA AGACTTCGAC GATCTTGTCT CTCAGGGACG AGGCGAAGGC TTCACCCTGT TAGAAAAAAA GGATATGGGT CGGGTCATAG GCTCGAACTG CTATGAGGGG GCGCTGGTCG ATATGAATAG CGGCCATCTG CACCCCTTAA ACTTAGCCCT TGGCGAAGCC CGTGTCGCCA GGGAGCTGGG GGTAAAGATG TTTGAATACA GCGCAGCACA GAAGATTATC AAGGGAGATA AGCCTAAAGT CATCACAGAA CATGGTGAAG TGAACTGTCA GTACTTGGTG CTGGCGGGCA ACGCCTATAT AGGTCATCAA CTCGACGGCT ATGTCGGGGG CAAGGTACTA CCGGCGGGCA GTTACCTGCT GGCCACCGAG CCCCTTAGTG ATGAACAGTG CAAAGATATC ATTCCTCAGG ATATGGCCTT CGCCGATATG CGTATCGATC TCGACTACTT CCACCTGTCA GAAGATAACC GCCTGCTTTT CGGTGGCCTG TGTACCTATT CAGGCAAAGA TCCCAAAGAT ATCGAGGCTG CACTGCGCCC TAATCTCGAA AAGGTTTTCC CGCAGCTTAA GGGAGTCAAA ATCGATTTCG AGTGGGGAGG CATGATAGGC ATAGGAGCCA ACAGGCTCCC TCAAATCGGC CGTATTCCGG ATTGCCCGAA CATCATGTAT GCACAGGCCT ATTCCGGCCA TGGCGTCAAC GCCACCCATA TGGCGGCAAA ACTCATCGCT GAAGCGTTAT CGGCCCAGGC TGGACGATTC GATATCTTCG ATAAGATACA GCATATGACC TTCCCCGGCG GGCCAACATT CAGATCGCCC ATGTTGGCGG CAGGGATGCT ATATCATAGG TTTTTGGATA TTTTTTGA
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Protein sequence | MQAKSPVHSD MYPSSYYLNT AKELYEHPQL RERIDVDVCV VGGGFSGINT AIELAQKGFS VALLEAKRIG WGASGRNGGE LIRGIGHNIE QFRNVIGDEG VSAINQMGFE AVDIVRQRVA EHNIDCNLQM GYCDLAMRPR HMKELKQDFD DLVSQGRGEG FTLLEKKDMG RVIGSNCYEG ALVDMNSGHL HPLNLALGEA RVARELGVKM FEYSAAQKII KGDKPKVITE HGEVNCQYLV LAGNAYIGHQ LDGYVGGKVL PAGSYLLATE PLSDEQCKDI IPQDMAFADM RIDLDYFHLS EDNRLLFGGL CTYSGKDPKD IEAALRPNLE KVFPQLKGVK IDFEWGGMIG IGANRLPQIG RIPDCPNIMY AQAYSGHGVN ATHMAAKLIA EALSAQAGRF DIFDKIQHMT FPGGPTFRSP MLAAGMLYHR FLDIF
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