Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1042 |
Symbol | |
ID | 5612833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1236859 |
End bp | 1237242 |
Gene Length | 384 bp |
Protein Length | 127 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931890 |
Product | protein of unknown function DUF861, cupin_3 |
Protein accession | YP_001472781 |
Protein GI | 157374181 |
COG category | [R] General function prediction only |
COG ID | [COG3450] Predicted enzyme of the cupin superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0284329 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.382411 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAATATTG ACTCAATCAT TAACTTTTCG ACCTCCCTTC CTGACGTAGA AAACTTCAGG CCGGAACAGG AGAAGATCTT ATCCGGCGAA CCACTACAAC GGGTTGAAAA TCACTACTCC AGTCCCTGTA AGCAATTTGA TGCGGGCGTA TGGACGGGAG CGAAAGGCGC CTGGAAGGTC GGCTATACCG AACATGAATA TTGCGAAATA CTCGCCGGTT CCAGCATCAT CACAGATAGC CAGGGGCAAT CGATACAGGT TAATAGAGGG GATAAATTTG TCATCCCAGC CGGATTCAGA GGCACATGGG AGGTGTTAGA TACCTGTAAG AAAATCTATG TGGTCTTCCA GCAGAATAAC CAGAACATCA CACAGCCTTG CTAA
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Protein sequence | MNIDSIINFS TSLPDVENFR PEQEKILSGE PLQRVENHYS SPCKQFDAGV WTGAKGAWKV GYTEHEYCEI LAGSSIITDS QGQSIQVNRG DKFVIPAGFR GTWEVLDTCK KIYVVFQQNN QNITQPC
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