Gene Ssed_1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1042 
Symbol 
ID5612833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1236859 
End bp1237242 
Gene Length384 bp 
Protein Length127 aa 
Translation table11 
GC content47% 
IMG OID640931890 
Productprotein of unknown function DUF861, cupin_3 
Protein accessionYP_001472781 
Protein GI157374181 
COG category[R] General function prediction only 
COG ID[COG3450] Predicted enzyme of the cupin superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0284329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.382411 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAATATTG ACTCAATCAT TAACTTTTCG ACCTCCCTTC CTGACGTAGA AAACTTCAGG 
CCGGAACAGG AGAAGATCTT ATCCGGCGAA CCACTACAAC GGGTTGAAAA TCACTACTCC
AGTCCCTGTA AGCAATTTGA TGCGGGCGTA TGGACGGGAG CGAAAGGCGC CTGGAAGGTC
GGCTATACCG AACATGAATA TTGCGAAATA CTCGCCGGTT CCAGCATCAT CACAGATAGC
CAGGGGCAAT CGATACAGGT TAATAGAGGG GATAAATTTG TCATCCCAGC CGGATTCAGA
GGCACATGGG AGGTGTTAGA TACCTGTAAG AAAATCTATG TGGTCTTCCA GCAGAATAAC
CAGAACATCA CACAGCCTTG CTAA
 
Protein sequence
MNIDSIINFS TSLPDVENFR PEQEKILSGE PLQRVENHYS SPCKQFDAGV WTGAKGAWKV 
GYTEHEYCEI LAGSSIITDS QGQSIQVNRG DKFVIPAGFR GTWEVLDTCK KIYVVFQQNN
QNITQPC