Gene Ssed_1036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1036 
Symbol 
ID5613083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1233026 
End bp1233283 
Gene Length258 bp 
Protein Length85 aa 
Translation table11 
GC content50% 
IMG OID640931884 
ProductMarR family transcriptional regulator 
Protein accessionYP_001472775 
Protein GI157374175 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0755699 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.33215 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCAGA CTAGGCAGAG CGTACAGCGC ATCGCCAACG AGTTGGAAAA GTTGGCGATT 
GTCTCGTTTG AAGATAACCC GGATCATAAG ACGGCTAAAT TGATTGAGCG TACCGAGAAG
GGCGCTCAGT TGTTTGAAAG GCTAAGTGAG CTTCTTCCTG CCTGGAGTGA CGCGGCATTG
GAAGGTATTA CCGAACAGGA GTTGGCGACA ACCCTGAAAG TCGTCGCTAA ACTCGTGACT
CACTTTGAAA AAAGTTAG
 
Protein sequence
MGQTRQSVQR IANELEKLAI VSFEDNPDHK TAKLIERTEK GAQLFERLSE LLPAWSDAAL 
EGITEQELAT TLKVVAKLVT HFEKS