| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1032 |
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| Symbol | |
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| ID | 5610316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1228423 |
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| End bp | 1229121 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931880 |
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| Product | response regulator |
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| Protein accession | YP_001472771 |
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| Protein GI | 157374171 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0894814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.523068 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAACA AATTATCCGT GCTACTTATC GATGATGATA TCGAACTTTG TGAGCTTGTT
CGTGACTATC TGATCCAAAA CGATTACAGG GTCAGTGTGC TTAACGATGG CCTCAACGCC
GCGAAGGAGA TCCTCAGTCA GAACCCACAC ATAGTCATAC TCGATCTGAT GCTCCCCCAT
GTCGATGGAC TCACCATATG CAAACAGGTC AGAGAGGACT ACCACGGCTC GATAATCATG
TTGACGGCAC TCGATGATGA TATCGATGAG GTCACCGGCC TCGAAGTCGG CGCCGATGAC
TATCTGGCGA AGCCCGTTAA ACCCAGAGTG TTACTCGCTC ATATCAGGGC GCAACTCAGA
CATCTCGAGA AGCACAAGAA ACGTCAGGAG ATGGAAAGTA TACAGTTTGG CAACCAATGC
TTTGTGCTCA ACCCGGCAAA CAGAACCCTC AGCGTCGACC ACCAGCCGAT CGAACTCACC
GGCGCCGAGT ACGATGTCCT GTTGCAACTC GCCATACACT GCGGTGAGAT AGTCAGCCGG
GACGCACTAC ATAAAACCAT CTTCAATTTT GAATATGATG GTATTGAGCG CTCGATAGAC
CTACGCATAT CCAGACTCAG AAATAAATTA AACCAACATG CCGAATCGGG GAATATTATC
CAGACGGTCA GAAACAAAGG ATACCTGCTT GCGAGATGA
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| Protein sequence | MKNKLSVLLI DDDIELCELV RDYLIQNDYR VSVLNDGLNA AKEILSQNPH IVILDLMLPH
VDGLTICKQV REDYHGSIIM LTALDDDIDE VTGLEVGADD YLAKPVKPRV LLAHIRAQLR
HLEKHKKRQE MESIQFGNQC FVLNPANRTL SVDHQPIELT GAEYDVLLQL AIHCGEIVSR
DALHKTIFNF EYDGIERSID LRISRLRNKL NQHAESGNII QTVRNKGYLL AR
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