| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1012 |
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| Symbol | |
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| ID | 5609623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1204825 |
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| End bp | 1206705 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931860 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472751 |
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| Protein GI | 157374151 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACTGA AACATAAAAT AACGGGGCTG TTCACTTCGT TATCATTTTT TATGGTACTT
CTTGTATCGA TTGTTGCTTA TCAAAATTTT GCAGAGTTCA GCCAGGCTAG TTACCAGGCA
AAGGTTGAAA CGCAATCTAA GTTGGTGGCT CAGGCATTAG ATGAAAAGTT AATGCGCTTT
TTCGATGTGA TCGATTCCGC CGCATTCTTT TTCGACGACA ATGGTGAGCT CGATCTTGAA
CGAGCAAATA TCACCGTTGA GCAGATTGCC AGAACGGTAA AAGGGGAGGC CGGTATCTAT
TTGGGCTTGA AAGATGGCAC CCTGATTAGT GATGGCAAGG TTGTGGCTAA TTTCAATGCG
ATCACGGCTA AGCGTGAGTG GTTCTTGAAA ATCTTTGAAG GTGAGCATTA CGTAGTTTCA
AGGTCTTTTG TGGATGTCAC TAAGAACGTC GAAGTGTTTG GCCTTTCAGT GCCTATTATG
CACCAAGGGC GAACTTCCGG AGTCGTGTTG ATCAACATCC CGGTTAAGTT ATTCAGTGAT
TTCGCCGCCT CTCTTACCAG TAACAACCAG ATGTTCGTCT ACCGCAGCGA TGGCTATATT
TTATCGAGTG AGGATAAAGA TAATATTGGT AAGAACATAT TTGAAATACG CCCACAATAC
AGGGTGATAT CAGAATCAAA CAAGTCGATG ACATACACAG CTCAAGGTTT GGGCGATTAC
TTCGTTACAA GTAATAAGTT GAAGGTTCGT AATTGGACTG TGGCTAGCTA TGAAGCGGTT
AATGTTATTG AAGCTGCCAG CATGAATAAT CTATATGACG CGCTAATCTT GATTTTCATC
TCTCTGGCTG CACTCATGAT CGTTATTTAC CAGATGGTTA TTCGTCTTAT CTACAAGCCT
ATTGGCGGTG AACCACTGGA GATTTCAAAC ATTGTTAAGC AAGTGGCAGA GGGTGATTTG
AGTATGGATT TAACCTCTTC CGGGTTGAAG GAAGGTATTT ATGGCAATGT GATCTCCATG
GCACAGAATC TTAGGGTCAT TGTCACCAAT ATCAATGAAA CGACAGGTGA ACTAAATCGC
TCCTCTGTCT CCCTATCATC GTCAGCAGAG ACTATGAGTG ATGGATCAAA GGCACAAACA
GTGCAGCTCG AGCAGACTTC GGCGGCGATG AACGAAATGA CCTCCACAGT CGATGAAGTG
GCACGAAGTG CACTGCAAGC GGCAGAGTCG GCCCAGGGCA CTAACGAGCA TTCCGAGGTT
GGAATGAAGG TGGTAGAGGA TATGAATGCC AATATCCGTT CACTGGTCAA CGAGATGAAC
GATGTCACCC ATGTCATCGA AAATGTTGAG GCCGAAACTG TCAATATTGG TAGTATTCTC
GATGTGATTA AAGGCATTGC CGACCAGACT AATCTTTTGG CGTTAAATGC TGCAATTGAA
GCGGCACGAG CCGGTGAGCA AGGTCGAGGT TTTGCGGTTG TGGCAGATGA AGTTCGAAGT
CTTGCAAGCC GTACGCAAGA GAGCGCCAAT GAGATATCTG TGATGATTGA AAAGCTGCAA
ACAGAGGCTA AGAAAGCGGT AGAGCGGATG GGGAGTAATG CCAAGCTTGC TCGACTGACT
TCGAAAAAGA CGGAGGAAGC AAACCTATCC CTGACACAAA TAACGACTTC TGTTTCTGTC
ATTCTAAATA TGAATGACCA GATCGCCACG GCATCAGAGC AGCAGACTCA GGTGGCAGCG
GAGATTAACC AGAGTGTTCT GGAGATCAAT GATTCGGCAA AAGAAACCAA TAAGCACGCC
GATAGCACTA CGGAACTCGC ACAACAGCTG GGCGGAATGG CGAATACCCT AAATGGTATT
GTGAGCCAAT TTAAGCTTTG A
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| Protein sequence | MLLKHKITGL FTSLSFFMVL LVSIVAYQNF AEFSQASYQA KVETQSKLVA QALDEKLMRF
FDVIDSAAFF FDDNGELDLE RANITVEQIA RTVKGEAGIY LGLKDGTLIS DGKVVANFNA
ITAKREWFLK IFEGEHYVVS RSFVDVTKNV EVFGLSVPIM HQGRTSGVVL INIPVKLFSD
FAASLTSNNQ MFVYRSDGYI LSSEDKDNIG KNIFEIRPQY RVISESNKSM TYTAQGLGDY
FVTSNKLKVR NWTVASYEAV NVIEAASMNN LYDALILIFI SLAALMIVIY QMVIRLIYKP
IGGEPLEISN IVKQVAEGDL SMDLTSSGLK EGIYGNVISM AQNLRVIVTN INETTGELNR
SSVSLSSSAE TMSDGSKAQT VQLEQTSAAM NEMTSTVDEV ARSALQAAES AQGTNEHSEV
GMKVVEDMNA NIRSLVNEMN DVTHVIENVE AETVNIGSIL DVIKGIADQT NLLALNAAIE
AARAGEQGRG FAVVADEVRS LASRTQESAN EISVMIEKLQ TEAKKAVERM GSNAKLARLT
SKKTEEANLS LTQITTSVSV ILNMNDQIAT ASEQQTQVAA EINQSVLEIN DSAKETNKHA
DSTTELAQQL GGMANTLNGI VSQFKL
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