Gene Ssed_1012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1012 
Symbol 
ID5609623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1204825 
End bp1206705 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content45% 
IMG OID640931860 
Producthypothetical protein 
Protein accessionYP_001472751 
Protein GI157374151 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTACTGA AACATAAAAT AACGGGGCTG TTCACTTCGT TATCATTTTT TATGGTACTT 
CTTGTATCGA TTGTTGCTTA TCAAAATTTT GCAGAGTTCA GCCAGGCTAG TTACCAGGCA
AAGGTTGAAA CGCAATCTAA GTTGGTGGCT CAGGCATTAG ATGAAAAGTT AATGCGCTTT
TTCGATGTGA TCGATTCCGC CGCATTCTTT TTCGACGACA ATGGTGAGCT CGATCTTGAA
CGAGCAAATA TCACCGTTGA GCAGATTGCC AGAACGGTAA AAGGGGAGGC CGGTATCTAT
TTGGGCTTGA AAGATGGCAC CCTGATTAGT GATGGCAAGG TTGTGGCTAA TTTCAATGCG
ATCACGGCTA AGCGTGAGTG GTTCTTGAAA ATCTTTGAAG GTGAGCATTA CGTAGTTTCA
AGGTCTTTTG TGGATGTCAC TAAGAACGTC GAAGTGTTTG GCCTTTCAGT GCCTATTATG
CACCAAGGGC GAACTTCCGG AGTCGTGTTG ATCAACATCC CGGTTAAGTT ATTCAGTGAT
TTCGCCGCCT CTCTTACCAG TAACAACCAG ATGTTCGTCT ACCGCAGCGA TGGCTATATT
TTATCGAGTG AGGATAAAGA TAATATTGGT AAGAACATAT TTGAAATACG CCCACAATAC
AGGGTGATAT CAGAATCAAA CAAGTCGATG ACATACACAG CTCAAGGTTT GGGCGATTAC
TTCGTTACAA GTAATAAGTT GAAGGTTCGT AATTGGACTG TGGCTAGCTA TGAAGCGGTT
AATGTTATTG AAGCTGCCAG CATGAATAAT CTATATGACG CGCTAATCTT GATTTTCATC
TCTCTGGCTG CACTCATGAT CGTTATTTAC CAGATGGTTA TTCGTCTTAT CTACAAGCCT
ATTGGCGGTG AACCACTGGA GATTTCAAAC ATTGTTAAGC AAGTGGCAGA GGGTGATTTG
AGTATGGATT TAACCTCTTC CGGGTTGAAG GAAGGTATTT ATGGCAATGT GATCTCCATG
GCACAGAATC TTAGGGTCAT TGTCACCAAT ATCAATGAAA CGACAGGTGA ACTAAATCGC
TCCTCTGTCT CCCTATCATC GTCAGCAGAG ACTATGAGTG ATGGATCAAA GGCACAAACA
GTGCAGCTCG AGCAGACTTC GGCGGCGATG AACGAAATGA CCTCCACAGT CGATGAAGTG
GCACGAAGTG CACTGCAAGC GGCAGAGTCG GCCCAGGGCA CTAACGAGCA TTCCGAGGTT
GGAATGAAGG TGGTAGAGGA TATGAATGCC AATATCCGTT CACTGGTCAA CGAGATGAAC
GATGTCACCC ATGTCATCGA AAATGTTGAG GCCGAAACTG TCAATATTGG TAGTATTCTC
GATGTGATTA AAGGCATTGC CGACCAGACT AATCTTTTGG CGTTAAATGC TGCAATTGAA
GCGGCACGAG CCGGTGAGCA AGGTCGAGGT TTTGCGGTTG TGGCAGATGA AGTTCGAAGT
CTTGCAAGCC GTACGCAAGA GAGCGCCAAT GAGATATCTG TGATGATTGA AAAGCTGCAA
ACAGAGGCTA AGAAAGCGGT AGAGCGGATG GGGAGTAATG CCAAGCTTGC TCGACTGACT
TCGAAAAAGA CGGAGGAAGC AAACCTATCC CTGACACAAA TAACGACTTC TGTTTCTGTC
ATTCTAAATA TGAATGACCA GATCGCCACG GCATCAGAGC AGCAGACTCA GGTGGCAGCG
GAGATTAACC AGAGTGTTCT GGAGATCAAT GATTCGGCAA AAGAAACCAA TAAGCACGCC
GATAGCACTA CGGAACTCGC ACAACAGCTG GGCGGAATGG CGAATACCCT AAATGGTATT
GTGAGCCAAT TTAAGCTTTG A
 
Protein sequence
MLLKHKITGL FTSLSFFMVL LVSIVAYQNF AEFSQASYQA KVETQSKLVA QALDEKLMRF 
FDVIDSAAFF FDDNGELDLE RANITVEQIA RTVKGEAGIY LGLKDGTLIS DGKVVANFNA
ITAKREWFLK IFEGEHYVVS RSFVDVTKNV EVFGLSVPIM HQGRTSGVVL INIPVKLFSD
FAASLTSNNQ MFVYRSDGYI LSSEDKDNIG KNIFEIRPQY RVISESNKSM TYTAQGLGDY
FVTSNKLKVR NWTVASYEAV NVIEAASMNN LYDALILIFI SLAALMIVIY QMVIRLIYKP
IGGEPLEISN IVKQVAEGDL SMDLTSSGLK EGIYGNVISM AQNLRVIVTN INETTGELNR
SSVSLSSSAE TMSDGSKAQT VQLEQTSAAM NEMTSTVDEV ARSALQAAES AQGTNEHSEV
GMKVVEDMNA NIRSLVNEMN DVTHVIENVE AETVNIGSIL DVIKGIADQT NLLALNAAIE
AARAGEQGRG FAVVADEVRS LASRTQESAN EISVMIEKLQ TEAKKAVERM GSNAKLARLT
SKKTEEANLS LTQITTSVSV ILNMNDQIAT ASEQQTQVAA EINQSVLEIN DSAKETNKHA
DSTTELAQQL GGMANTLNGI VSQFKL