| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1008 |
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| Symbol | valS |
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| ID | 5609985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1196866 |
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| End bp | 1199781 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931856 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | YP_001472747 |
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| Protein GI | 157374147 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0987932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAAA CATACAATCC GCAGTCTATT GAACAGTCTC TCTACCAAAG CTGGGAAGAG
AAAGGTTACT TCAAGCCACA TGGCGATGAG TCGCAGGGCA ACTATTGCAT CATGATCCCG
CCACCAAATG TGACGGGAAG TCTGCATATG GGCCATGCCT TCCAAGATAC CATTATGGAT
ACCTTGACTC GTTATCAGCG TATGAAGGGC AAAAACACCC TTTGGCAGGT CGGTACCGAC
CATGCGGGTA TCGCGACTCA AATGTTGGTT GAGCGTAAAG TCGCCGCCGA AGAGGGGTTG
AATCGTCACG ATTTAGGCCG TGAGAAGTTC ATCGACCGTA TCTGGGATTG GAAGAACGAG
TCCGGCGGCA CTATCACTAA GCAACTACGT CGCCTTGGCG CATCGGTTGA TTGGGATCGT
GAACGTTTCA CCATGGACGA AGGTATGTCT GAAGCGGTAC AGGAAGTATT TGTACGCTTG
TACGAAGATG ACCTTATCTA TCGTGGCAAG CGCCTGGTTA ACTGGGACCC TGCCCTGCAC
ACCGCTATCT CAGATCTCGA AGTTGAGAAC AAAGAGAAGC AAGGTAGCAT GTGGCATTTT
CGCTACCCAC TTGCCGACGG CGCGTTAACT GCCGACGGTA AAGACTACTT AGAAGTGGCG
ACCACGCGTC CTGAAACCAT GTTGGGTGAC AGCGCCGTTG CGGTTCATCC CGATGATGAG
CGTTATGCGT CACTGATCGG CAAGTTCATC CTGCTGCCAG TCGTTAACCG TCTTATCCCA
ATTGTTGCCG ACGATTATGT CGACATGGAG TTCGGTACCG GCTGTGTGAA GATCACCCCG
GCCCACGACT TTAACGATTA TGAAGTCGGT AAGCGCCATG AATTGCCAAT GTATAATATC
TTAACCTTCG ATGCGGCGAT TCGTTCATCT GCAGAAGTGG TTAACACAGA TGGCACGGCT
AACAATGAAT TAGATAACAG CCTGCCTGAG CGCTATGCCG GTCTCGACCG CTTCGAGGCT
CGTAAAGTCA TTGTTGCCGA ATTCGAGACG CTTGGCTTGC TGGGTAAGAT CGACCCACAC
GGACTGAAAG TCCCTTATGG CGATCGCTCT GGCGTGGTTA TCGAGCCACT GCTTACCGAC
CAATGGTATG TCTCGGTTGC ACCTATGGCT AAAACAGCGA TGGAAGCCGT TGATAATGGT
GACATCAAGT TTGTGCCACA GCAGTATGAG AACATGTACA ACTCTTGGAT GCGTGATATT
AACGACTGGT GTATCTCACG TCAGCTTTGG TGGGGACATC GTATCCCGGC TTGGTATGAC
GAAGCGGGTA AAGTCTATGT TGGACGTGAT GAAAGCGAGG TTCGCGCTAA GCATAAGCTT
GACGATTCAG TGGTACTTCG CCAGGACAAC GATGTGCTCG ATACCTGGTT CAGCTCTGCG
TTGTGGACCT TCTCTACACT GGGCTGGCCA AAGAACACCG AAGAGCTTAA AGCCTTCCAC
CCAACCGATG TGTTGGTGAC AGGTTTTGAC ATCATCTTCT TCTGGGTTGC CCGCATGATC
ATGATGACCA TGCACTTCAT CAAAGATGAA AACGGCAAGC CACAGGTACC ATTCAAGACG
GTTTATGTTA CGGGTCTTAT CCGTGATGAA GCCGGTAACA AGATGTCTAA GTCTAAGGGT
AACGTACTCG ACCCACTGGA CATGATTGAC GGTATCGATC TTGAGTCACT GGTCACTAAG
CGCACCGGCA ACATGATGCA GCCTAAGCTT GCAGCAAAAA TAGAGAAGAG CACACGTAAA
GAATTTAGTG AAGGCATCGA AGCCCACGGT ACCGATGCGC TACGCTTCAC CCTAGCGTCT
ATGGCATCAA CCGGCCGTGA TATCAACTGG GATATGAAGC GTCTCGATGG TTACCGCAGC
TTCTGTAACA AGATCTGGAA CGCATCACGC TACGTGTTGA TGAATACCGA AGTTCAAGTT
GAAGATGCCG CTGACGATGC AATTGGCGAA GCACTAGATT GCGGTCAAAT CTTAGTTGAC
GGCAAGCCGG GTGAAATGGA GCTATCTCTT GCAGATCGCT GGATCATCGG TCTGTTCAAT
GAAACCGTTA AAGCCTACGA CGAGCATATG GAGAACTACC GCTTCGACCT AGCGGCTAAT
ACCATCTATG AGTTTACCTG GAACCAGTTC TGTGACTGGT ACCTGGAGCT GACTAAGCCA
GTGATGCAAA GTGGCACAGA GGCTCAGCTT CGCGGTACAC GTCATACGCT TGTGACAGTA
CTCGAGAAGA TGCAGCGTCT GATGCACCCG ATGATGCCTT ACCTGACAGA GACTATCTGG
AAGCGTGTAC AGCCACTCGC TGGCGTCGAA GGTGATACTC TTATGTTGGC TGAGTTCCCG
CAATATCAAG CGGACAAGGT TGATGACGCA GCGATGGAAG ATCTTGAGTG GGTTAAGCAG
GTGATCACTG CGGTACGTAA CATTCGCGCC GAGCTGAACA TTGCACCATC TAAGCCACTT
AACGCCCTTC TTCGCGGCGT GAGCGAGCAG GACAAGGCAC GCCTCGAGGC GAACCAGACC
TTCTTCAAGA CGTTGGCTAA GCTTGAGTCT ATGACAGTTC TTGCCGACGG TGAAACAGCC
CCAATGTCTA CCACTCAGTT GATTGGTGAT ATGGAGCTGC TTATCCCTAT GGCAGGCCTA
ATCGATGTGG CTAAAGAGGT CGCTCGTATC GACAAGCTAC TCGAGAAAGC GGCCGGTGAG
TTTAAGCGTA TCGAAGGTAA GCTCTCTAAC CAAGGCTTCG TGGCAAAAGC ACCTGCTGCC
GTGATTGAGA AAGAGCGTGC TAAGCAAGCC GAGTACCAGC GCGATATTGA GAAGTTAACC
GAGCAGAAAG CGGAACTGGC TAAGCTGGAA GGTTAA
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| Protein sequence | MEKTYNPQSI EQSLYQSWEE KGYFKPHGDE SQGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLTRYQRMKG KNTLWQVGTD HAGIATQMLV ERKVAAEEGL NRHDLGREKF IDRIWDWKNE
SGGTITKQLR RLGASVDWDR ERFTMDEGMS EAVQEVFVRL YEDDLIYRGK RLVNWDPALH
TAISDLEVEN KEKQGSMWHF RYPLADGALT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE
RYASLIGKFI LLPVVNRLIP IVADDYVDME FGTGCVKITP AHDFNDYEVG KRHELPMYNI
LTFDAAIRSS AEVVNTDGTA NNELDNSLPE RYAGLDRFEA RKVIVAEFET LGLLGKIDPH
GLKVPYGDRS GVVIEPLLTD QWYVSVAPMA KTAMEAVDNG DIKFVPQQYE NMYNSWMRDI
NDWCISRQLW WGHRIPAWYD EAGKVYVGRD ESEVRAKHKL DDSVVLRQDN DVLDTWFSSA
LWTFSTLGWP KNTEELKAFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE NGKPQVPFKT
VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIDLESLVTK RTGNMMQPKL AAKIEKSTRK
EFSEGIEAHG TDALRFTLAS MASTGRDINW DMKRLDGYRS FCNKIWNASR YVLMNTEVQV
EDAADDAIGE ALDCGQILVD GKPGEMELSL ADRWIIGLFN ETVKAYDEHM ENYRFDLAAN
TIYEFTWNQF CDWYLELTKP VMQSGTEAQL RGTRHTLVTV LEKMQRLMHP MMPYLTETIW
KRVQPLAGVE GDTLMLAEFP QYQADKVDDA AMEDLEWVKQ VITAVRNIRA ELNIAPSKPL
NALLRGVSEQ DKARLEANQT FFKTLAKLES MTVLADGETA PMSTTQLIGD MELLIPMAGL
IDVAKEVARI DKLLEKAAGE FKRIEGKLSN QGFVAKAPAA VIEKERAKQA EYQRDIEKLT
EQKAELAKLE G
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