| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1005 |
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| Symbol | |
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| ID | 5610063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1191313 |
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| End bp | 1192425 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931853 |
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| Product | radical SAM domain-containing protein |
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| Protein accession | YP_001472744 |
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| Protein GI | 157374144 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGCCG AAACCAATGT CATGAATATC AATAGCAATA GCAATAGCAA CATTGTTCCC
ACCAAGTACT GGCATAAATT AGACGATGGG CGTATCCAGT GCGATCTCTG TCCGCGAGAG
TGTCAGCTGC GCGATGGTAA ACGGGGAGTC TGTTTCGTAC GACAGAATCT CGATGGCATG
ATTAAGCTGA CCACCTATGG ACGCTCCAGC GGTTTCTGTA TCGATCCTAT AGAGAAAAAG
CCCCTGAATC ACTTTTATCC CGGAAGTTCA GTGCTCTCAT TCGGTACAGC CGGCTGCAAC
CTCTGCTGTA AGTTTTGCCA AAACTGGGAT ATCAGTAAAT CCCGTGAGTT CGATACCCTC
AGCGCGAGTG CGAGCCCGGA GGCTCTGGCG CGAACGGCCG CGCGAATGGG GTGTAAGAGT
ATCGCGTTTA CCTATAATGA CCCGGTGATA TTTCTCGAGT ATGCCGTCGA TGTCGCAAAG
GCCTGCCGAG AGCATCAGAT TAAAACCGTT GCCGTCACCG CGGGTTATAT TAACCCTGAA
CCTCGGGTCG AATTTTTCAA ATATATGGAT GCCGCCAATA TCGATCTTAA GGGATTTACC
GAGCAGTTCT ATCATAAAAT CTGCTCAGGT CACCTCAGTG ACGTACTCGA TACCTTGCTT
TATCTTCGTC ATGAAACACA GGTCTGGTTC GAAATCACCA CCTTGCTGAT CCCCGGAGAA
AACGATAGCT CCAAAGAGCT GGAGCAGCAG TGCAGATGGG TTCATGACAA CCTGGGGGCG
GATGTCCCCC TGCATTTTAG TGCCTTTCAC CCGGATTTTC ATATGCTGGA TAAGCCAAAA
ACCCCAGCTT CGACCCTATT ACGAGCTAGG GATATCGCCC TTCAACAGGG GCTCAATCAT
GTTTATACCG GTAATGTGTT CGATGTCGCA GGTGGCAGTA CCTACTGTCC GGGTTGCAAG
AAGCAGGTGA TAAACAGAGA TTGGTATGAG CTCGGAGAGT ACCACCTTAA CGCAGAGGGT
AAATGTACCT ATTGCGGGAC TCAACTGCCG GGACGTTTCT CCGGTGCTCC GGGTCACTTT
GGTCGTAACA GGATCCCGAT TTCCATTGGT TGA
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| Protein sequence | MSAETNVMNI NSNSNSNIVP TKYWHKLDDG RIQCDLCPRE CQLRDGKRGV CFVRQNLDGM
IKLTTYGRSS GFCIDPIEKK PLNHFYPGSS VLSFGTAGCN LCCKFCQNWD ISKSREFDTL
SASASPEALA RTAARMGCKS IAFTYNDPVI FLEYAVDVAK ACREHQIKTV AVTAGYINPE
PRVEFFKYMD AANIDLKGFT EQFYHKICSG HLSDVLDTLL YLRHETQVWF EITTLLIPGE
NDSSKELEQQ CRWVHDNLGA DVPLHFSAFH PDFHMLDKPK TPASTLLRAR DIALQQGLNH
VYTGNVFDVA GGSTYCPGCK KQVINRDWYE LGEYHLNAEG KCTYCGTQLP GRFSGAPGHF
GRNRIPISIG
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