| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1002 |
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| Symbol | |
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| ID | 5610056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1186394 |
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| End bp | 1189696 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931850 |
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| Product | methyl-accepting chemotaxis protein-like protein |
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| Protein accession | YP_001472741 |
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| Protein GI | 157374141 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTTC AGATCCTTTT TTTATGGTGT CAGCAAAGGA GGCTAGCCAT GAATCAATTT
TTTAAAGATA TGCCACTCGC CAGAAAGTTA ACTCTTGTCC TATCTTTTAT AGGTTTGTTT
CCAGCCATAG TCATCGCCTC AATCGCTCTC TATAACAGTT CACAAGCCCT CTCCCATGAT
AAGTCTTCGG CTTTGACCGC TGTGGTCGAG TTAAAGACCA GCATTATCGA ACAGTATTTT
GCTACTGCCG AATCTCAACT TCGCAACTTA AGCCGCAGTG GACTGGCTCA CCGGGCGCTG
GAGGCTTTTT CCGGTGGCTA TCACTCCTAT CTTTCAGACT CGAGCGAACC TTACAGCCTC
CAATCTTTGT CAGCCTATTA CCTGGATGAA TTCAAACAAA AGTATGTTGC CGAGACTCGC
ACCGAGATAG ATGGCACCGG GCTGGTGGCG GCTCTTTCGC CAACAGCTAA AGCGTTACAA
ACGACCTATA TCAGTCTCAA TACTCACCCT CTAGGAGAGA AAGATAAGCT CATTGATAGC
GGTGGTGATA CCGCCTATGA ACGTGCACAT AATCAGTTTC ATCGAGACTT TAGCAGTTAC
GTTTCTGAAT TTGGTTATTA CGATATTTTC ATTATCGATG CCGCCAGTCA TGATGTGGTC
TATTCGGTTT ATAAGGAGCT GGATTTTGCG ACAAATTTAC AGGCCGGCCC CTATAAAGAA
AGTGGCTTAG CCAAAGCTTA TAGGCAGGTG ATGCAAACCC AAAAAGTCTC CTTCGTTGAT
TACTCCTCCT ATACCCCTTC CTATGAAGCA CCGGCAAGCT TTATAGCCAG CCCTATTTGG
GCAAATGGAG AGATAACCGG AGTACTGATT TTTCAATTGC CTTTAGACAG AGTGAGCCAG
GTAATGAGCT CAACATTTGG TTTAGGTGTT ACGGGAGAGT CGTACCTGGT CGGTGATGAT
AATAAGATGC GTTCAGATAG CTTTTTTGAT AAAGCTTTTT CGGTCAGCGA GTCCTTCAGC
CAAGGCGAGG CGAATCTGGT TAATAGCCTA CAGGTTCAAC AAGCGTTGAA GCGTGAGTCC
GGTTTCATCG AGAGCACTAA CTACCGCGGA GACGATGTCG TCGCGGCCTT TGCGCCATTG
GATGTTATGG GGACGCAGTG GGCTGTAATC GTAGAGCAGA GTTCTGAGGA GGCTTATGCT
GCAATATCTT CGCTGAAGTT ACTCTTTATT GTGATGGTCG TGGGGTTACT GATACTGACT
CTGCTGGTCG CGATAAAATT TGGACGCTCT ATTGCCTCTC CGATACAGGA GCTATCGACC
TTTATCTTAG AGCTGAAGAG ACAGTGGCGT TTCTCTATGC GAGCGCAGGT GCGCAGCCAG
GATGAAACGG GGCAGGCTGC TACGGCCTTA AATGAGATGT TGAGTTCGCT CGATCTCGCG
GTTCAGGATA TCAACGGTAC TGTTGAGCAG CTTGCTAAGG GGAATTTTCG TCATCGTGTA
AAAACCCCCT TAGTTGGAGA CCTTAACGAG CTCAAGCAAA CGATTAATAA CTCTGCTCAA
TCGATTACGG AGTCAATCGA TGATATTGGT CGAGTGATGG AGTCTATTCA GAAAGGGGAC
TTCACCCAAA GGGTCGAGGT TGAGGCCCAC GGTCAGTTGA ATGATCTGAC TGATATGGTG
AATAACACGG CGCAAACTAC GGCGATATTT ATTGAAGATG CCGTGAATGT TATACAGAAG
CTGGAGAGGG GAGATTATAA CGTACGGGTT AATGCCTCCG CTCAAGGTGA GCTTGCCGCA
TTTAAGCAGG CGATTAATCA CAATATTGAA AATACCCAGA CGATTATCGA AGAGATTGTC
TCTGTGATGC AACAGATGCA AGAAGGGGTG TACGGCAAGC AAGTTGAATG TGACGCTCAA
GGTCAATTAG CCTTGATTAA ACATAGCGTT AATGCAGCAT CCAATACTAC TGATGAAATT
ATCAGAGAGA TCATCCAGGT GATGGAGGGG TTAGCGCAGG GAGATTTCAG TCAGAATGTC
ACTGTGGAAG CTAAAGGCGA TCTTGCTCGC CTTAAACTCA GCATCAATCA GGCTGCGTCC
GGCTCGAATG ATGTGGTCAA TGACATCATC ACTGTAATGA GGAAGATCGC GCGGGGCGAG
TTTGAGCAGC AGGTGGTGGT TAATGCAAGA GGGCAACTGC TGGAGTTGAA AGATAGTGTT
AATTTAGCCG CCATGACATG CGATCAAGTG GTTAAGGCCA TATCTGAGGT GATGAATTCA
TTGGTTCATG GGCAGTTGGA TCAGCGAGTG AGTATCGACA CCGCCGGTGA TTTTAATCAA
TTGTCTCAAT CTGTGAACCT TACCTGTGAC TCTCTGGAGT CCACTTTGGG TCAATCTAAG
GACGTGATGG AGTCTGTGGC CAGAGGAGAT CTGACTCAAT CTTTTCAGCT TGAGGTTGAA
GGTCAGTATG CCAGCCTGAA GCAGAGTATT AATCGTACGG TTGATAACCT TGTCTCCATG
ATTCAAGAGA TCCGAAGTTC GGCAGATGTT GTTAATCACA AGACTAAGGA TGCATCAGAT
GAAACCTCTG GTCTGAACCA GCAAGTCGAT GAGCAAGTTG CCAGCCTGGA AGCCATCTCA
AGTTCAATGA CTCAAATGCA GGCCTCAATC GATAACTCTT TATGCAAGGC TCAGGCGTCG
GCGGATATGT CTGTGCAAGC TTACCAGTTT GCGGTCGATG GCGAGCGTGT CGTCGAGCAC
GTGATTAGTG CGATGGAAGA CATTACTCAG TCCAGCTCTA AGATGTCTAA TATTATCGGG
GTTATCGATG AGATAGCCTT TCAGACTAAT CTGTTAGCCT TGAATGCGGC GGTTGAGGCC
GCCAGAGCGG GTGAGCAGGG AAGAGGCTTC GCGGTTGTCG CGGCAGAGGT GAGAAATTTA
GCCCAGCGTA GTGCCGATGC CGCCAAGGAG ATCTCGGGGC TGATTAATGA CTCAGTGGAT
AAGGTCAACG CAGGTGCAGG CCTGGTTACA GAATCGGGAG AGCTGCTTAA GCAGATCACC
ATATCGAGTG AGAATGTACG GGATAATGTA GACGAAGTCA CATTGGCGAT GAAAGAGCAG
CAAAAACAAG TCTCTTATGT TACTCACTCT GTCGGGAGTG TCGATAGTAA CATTCAACAA
AGTGCCATGA TGCTCGATAA CCTCAATGGA AATGTTGGTG AAGTTAAACA ACAAGCGGTC
AATTTATTGA ATCTGATTGA GAAGTTTCAG CTACGCTCAT CGAGCATACT TAAAGTGGTG
TGA
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| Protein sequence | MEVQILFLWC QQRRLAMNQF FKDMPLARKL TLVLSFIGLF PAIVIASIAL YNSSQALSHD
KSSALTAVVE LKTSIIEQYF ATAESQLRNL SRSGLAHRAL EAFSGGYHSY LSDSSEPYSL
QSLSAYYLDE FKQKYVAETR TEIDGTGLVA ALSPTAKALQ TTYISLNTHP LGEKDKLIDS
GGDTAYERAH NQFHRDFSSY VSEFGYYDIF IIDAASHDVV YSVYKELDFA TNLQAGPYKE
SGLAKAYRQV MQTQKVSFVD YSSYTPSYEA PASFIASPIW ANGEITGVLI FQLPLDRVSQ
VMSSTFGLGV TGESYLVGDD NKMRSDSFFD KAFSVSESFS QGEANLVNSL QVQQALKRES
GFIESTNYRG DDVVAAFAPL DVMGTQWAVI VEQSSEEAYA AISSLKLLFI VMVVGLLILT
LLVAIKFGRS IASPIQELST FILELKRQWR FSMRAQVRSQ DETGQAATAL NEMLSSLDLA
VQDINGTVEQ LAKGNFRHRV KTPLVGDLNE LKQTINNSAQ SITESIDDIG RVMESIQKGD
FTQRVEVEAH GQLNDLTDMV NNTAQTTAIF IEDAVNVIQK LERGDYNVRV NASAQGELAA
FKQAINHNIE NTQTIIEEIV SVMQQMQEGV YGKQVECDAQ GQLALIKHSV NAASNTTDEI
IREIIQVMEG LAQGDFSQNV TVEAKGDLAR LKLSINQAAS GSNDVVNDII TVMRKIARGE
FEQQVVVNAR GQLLELKDSV NLAAMTCDQV VKAISEVMNS LVHGQLDQRV SIDTAGDFNQ
LSQSVNLTCD SLESTLGQSK DVMESVARGD LTQSFQLEVE GQYASLKQSI NRTVDNLVSM
IQEIRSSADV VNHKTKDASD ETSGLNQQVD EQVASLEAIS SSMTQMQASI DNSLCKAQAS
ADMSVQAYQF AVDGERVVEH VISAMEDITQ SSSKMSNIIG VIDEIAFQTN LLALNAAVEA
ARAGEQGRGF AVVAAEVRNL AQRSADAAKE ISGLINDSVD KVNAGAGLVT ESGELLKQIT
ISSENVRDNV DEVTLAMKEQ QKQVSYVTHS VGSVDSNIQQ SAMMLDNLNG NVGEVKQQAV
NLLNLIEKFQ LRSSSILKVV
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