| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0998 |
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| Symbol | |
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| ID | 5610219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1179811 |
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| End bp | 1182111 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931846 |
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| Product | decaheme cytochrome c |
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| Protein accession | YP_001472737 |
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| Protein GI | 157374137 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT ATAATGGATC CTTACTGGCC ATGGCACTGA TTAGTGTCAT TGGCCTTACC
GCGTGTGATG GCGATGATGG TAAAGATGGT GCTCCGGGAG ATCCTGGAAC ACCGGGGACT
CCGGGAACTC CGGGATTACC TGCAGGCTCA TTTACTAACA CTGTAAACTC GGCAGCTGAT
TTTGTACTGA CCTTAGCGCC AGCCGATATC GTTGTTGTTG GAACTGAAGA TTTCTCACTC
AAATTCACCG TTACCGGTAA AAACAGTAAA GGTGAAGCTG TACCTTTTGT TGGGTTAGAT
AAAGTTGCGC TATACGTGAC TAATCAGACC GTTAATACCA CTGATACCGG TGCCCCCATG
CTATGGGCCA ACAATGCCCT AACCAATGAA TTTGGCTCAA GCATGTACTG TACACCAACA
GGTAAGGCCA CAGCTCGTGG TGGTGCAGAA GTGGATGCAT GTACCTTAGT TGAAGACGCT
GAAAACCCAG GTACTTATAC CGGCTCATGG GTGCATGACG GTAATGCACC CGTCGTATTG
GCCGCCGGCG ATCCAAATAC TCTCTATCGA GTCATGATCC GCTCATATAA TGTGGTCGAC
AGTCAAGGCG AAGGGATCTC CGATAAGTTA CTCTCTACTC CCCTTGATTT TAACCCATCC
ACCGGCGAGC TCGCCGTTTC AACAAAGGAT ATCGTTTCCA ACGCAGCCTG CATCAAGTGT
CACACTCAGA TGGATGGTTA TGGAGAAGGT GATGTGCGTA TCGCTAATAT CGGTGCTCAC
CATAACTATC AAAAAGTTGA AAACTGTATC ACCTGTCATA ACCCTGCGTA CGCGGGTGGA
CAAGACGATC CCGAGAAAGG CTTTAACGCC AACTTCAATG CGATGATCCA TACCATACAT
AAGGGTCATC ATTTCGGTGA CGAGCTTGTT GGTGAGGCGA AAGAGGAGTT TGGTGAAATA
GGCTTCCCAA GTGAACTCAA CGAATGTACT ACCTGTCATG ATGGCGCATC GGGCTGGAAT
GATAATGTCT ACGCCGAAGC GTGTCAGGGA TGTCATATGG ATGTCGATTT CACAACCGGT
GAAAATCACC TGGGTATCGT TCCCGGAAGT GACGCAGCCT GTTCAGGTTG TCATGGTGCT
GGTAGTCTGA GTCCTATACA GGCGCACAAC GTGGGTATAC GTGCGATGGC AACAGACTCG
ATTGAGATTG CCGTTAGTTC TGTCTCATAT ACTGAAAATG TGTCACCCAT TGAAGATGAA
ATCGTTGTTA CTTTCGATGT GACGGTTGAT GGTGCTCCAG TTGCCGATGG CTTCGAGTTC
ACTGAGTTCA CTAAGTATGA CGAGATGAAG ACCGGCTGGG TTGATACTGA CGGCACTTAC
TACGGTAGCG CATCAGTCAA TCTTAATGGT ACAGCGGCTG CCGGTGGCAA GTTGGTTGTG
ACTCAAACCG CCGAATATAA CTTGGGTGGC AAGAGCATTG CCATTACACC ACGTTTCTCT
GTGTGTACTG ACTCGAAAGG CATGATGGTT GCCTGCTTAG ATGGCAGCGG TGAAGCCCAG
TATGACATCG GCTATGTTGC CGTCACTATG GATGCAGCTT ATTGGAACCT TGCTAATGCC
GATGGCAGCG GGGCAACCAT TGCCCGTCAA AGTGATCCGC TACGCATGAC GGCCGATGAA
GCTAAGTGTA ATACTTGTCA TACGTCGCTG GGTATTGCTA AACACTATGG TAACGAGCGC
TTCGACCAAT GTGTAGGTTG TCACAATAAT ACATGGGGTG GCTCATATCA TGTCGGTGTT
GAGTACAAGA GTGATGAGGT TGACGCCGAT GGTAATCCTA TCTTCAAGCC AGTTGAAGGT
CTGACTTACC ACACTCGTGA CCTGTTCGCT GTTGCACACC GTTTCCATAC GGGTCTTTGG
GATGACAACA GAGGCTTCCC TGCAATACAT CTTAATTCAG ATATGGAAAC ATTAGGTTTC
CCAGCCGTTG AGACTCAATG TAGTGCATGT CATAAAGATG GTGTTAACTT GTTCGCTGCC
GACGGTGGGT TAACTTCCGG TAAGCGTGCT ATCGCAGTCG ATGGTGGTGC AACCATGTTT
ATCTCACCTG TCGCAGAAGC TTGCCGTACT TGTCACGCTC ACTCAGGACC TGCAGCTCTG
GCTCACTTCA AGAGCAATGG TGCGATTGTA GAAGGTGAAG CGGTTGCTAC CTCGGCTCTA
CCTGTTGAGT CTTGCTCAAC TTGTCATGGC GAAGGTAAGA CCTATGGTAT CGACAAGATG
CATGCGGGGG GGGCTCACTA G
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| Protein sequence | MKKYNGSLLA MALISVIGLT ACDGDDGKDG APGDPGTPGT PGTPGLPAGS FTNTVNSAAD
FVLTLAPADI VVVGTEDFSL KFTVTGKNSK GEAVPFVGLD KVALYVTNQT VNTTDTGAPM
LWANNALTNE FGSSMYCTPT GKATARGGAE VDACTLVEDA ENPGTYTGSW VHDGNAPVVL
AAGDPNTLYR VMIRSYNVVD SQGEGISDKL LSTPLDFNPS TGELAVSTKD IVSNAACIKC
HTQMDGYGEG DVRIANIGAH HNYQKVENCI TCHNPAYAGG QDDPEKGFNA NFNAMIHTIH
KGHHFGDELV GEAKEEFGEI GFPSELNECT TCHDGASGWN DNVYAEACQG CHMDVDFTTG
ENHLGIVPGS DAACSGCHGA GSLSPIQAHN VGIRAMATDS IEIAVSSVSY TENVSPIEDE
IVVTFDVTVD GAPVADGFEF TEFTKYDEMK TGWVDTDGTY YGSASVNLNG TAAAGGKLVV
TQTAEYNLGG KSIAITPRFS VCTDSKGMMV ACLDGSGEAQ YDIGYVAVTM DAAYWNLANA
DGSGATIARQ SDPLRMTADE AKCNTCHTSL GIAKHYGNER FDQCVGCHNN TWGGSYHVGV
EYKSDEVDAD GNPIFKPVEG LTYHTRDLFA VAHRFHTGLW DDNRGFPAIH LNSDMETLGF
PAVETQCSAC HKDGVNLFAA DGGLTSGKRA IAVDGGATMF ISPVAEACRT CHAHSGPAAL
AHFKSNGAIV EGEAVATSAL PVESCSTCHG EGKTYGIDKM HAGGAH
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