| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0969 |
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| Symbol | |
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| ID | 5611521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1152630 |
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| End bp | 1153319 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931817 |
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| Product | nucleotidyl transferase |
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| Protein accession | YP_001472708 |
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| Protein GI | 157374108 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0165491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGCGA TGATCTTAGC GGCGGGTCGG GGAGAGAGAT TGCGTCCTCT CACCGACTCA
GTTCCGAAAC CGCTGGTTAG AGTCGATGGC AAGCCATTAA TCGTCTATCA CATTGAGCGT
CTGGCCAAGG CTGGTATTAG CGAGATTGTC ATCAATCACG CCTGGCTCGG TGATAAGTTG
GTTCAAGCGT TGGGAGATGG TAGTCGATGG GGGATCACCA TTATCTACAG TGCAGAGTCC
AGTGCTTTAG AAACCGGCGG AGGGATAAAA CAGGCCTTAC CCTTGCTGGG CAATCGTCCC
TTTCTGGTGA TCAATGGTGA TATCTTTATC GATGAGCTGC CCGATTTTTC CGAGCCGGAT
CCGACCGAGC TGCTTAATGG AAAACTCGCT CACCTATGGT TGGTCGATAA CCCGGAGCAG
CACCCCAGGG GGGACTTTCC CTTAAGAGAT GGGTTGGTTG CGGCCGAAAC CCTTGATAAT
GAGCCAAGAT TGACGTTTTC AGGTATGGGG ATTTACCACC CTTCACTTTT TGAAAATACT
CCGGATAATG GTTTCCCATT GGCGCCGTTA CTTAGAGAGA AAATGGCGTT AAGTGCGGTT
TCTGGTTCAT ATTTTCCGGG CTTTTGGTGT GATGTAGGGA CAAAGGAGCG TTTAGACAAA
TTAGAGCGTC GACAGCAAGA GATGAGGTAA
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| Protein sequence | MKAMILAAGR GERLRPLTDS VPKPLVRVDG KPLIVYHIER LAKAGISEIV INHAWLGDKL
VQALGDGSRW GITIIYSAES SALETGGGIK QALPLLGNRP FLVINGDIFI DELPDFSEPD
PTELLNGKLA HLWLVDNPEQ HPRGDFPLRD GLVAAETLDN EPRLTFSGMG IYHPSLFENT
PDNGFPLAPL LREKMALSAV SGSYFPGFWC DVGTKERLDK LERRQQEMR
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