| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0967 |
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| Symbol | |
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| ID | 5611519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1149150 |
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| End bp | 1151474 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931815 |
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| Product | organic solvent tolerance protein |
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| Protein accession | YP_001472706 |
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| Protein GI | 157374106 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1452] Organic solvent tolerance protein OstA |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000267662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATCC GTTATTTATT GGCACTAAGC CTACTTCCCC AATTAGTCTT GGCTGAAGAA
ACTCCAGCTA CATCCAATTC CGATACTCAG TGTATCGTCG AACCTCCGGT TCCCCGTTTG
ACGCCGCCAG AAAACAGCGA TGGAAAGATA GATCTCCAGG AGATCCGCAT CATATCTGAT
CGCTCAGAAG CCCAAATGGG TAAACAGGCC AAATTTAACG GTGATGTCTC ATTCAGTCAG
GGCGGGCGTA ATATCGCTGC CGATGAGGCT ATTTTAGATC AAGAAGCGGA GCGTTTAGAC
GCTAATGGAA ATCTGGTCTT TCAGGATCAA ATGTTTACCG TCACCGCCGA TTCTCTCACC
GCCGAGATGC GCAGTAATAG CGCCACCTTA TCAGGGGCTC AATACTGGTT ACATGGCCAA
CAGATCCATG GCGATGCAGA AAAGCTGGAG ATCACACCAG ATAACAATCT CCACCTGACC
AAGACTAACT TTACCACTTG TCCTCCAGAG GATACCTCTT GGTTACTCGA AGCCGAAACG
ATAAAAATTG ACAGTAAAGA GGAGTGGGGC GAGTTATGGG ACGCCAAACT GAAAATAGGC
AACGTACCAG TTCTCTATAT TCCCTATATG ACGATACCGG TATCGGATAA ACGTAAATCA
GGCTTCCTGT TTCCAACTTT TAGTACCAGT ACCACCAATG GTGTTGAAGT TGCTACCCCC
TATTATTGGA ATATAGCACC AGACTATGAT CTGACCTTCA CGCCTCACTA TATGTCTGCC
CGTGGTCTGT TTTTAAAGAG TGATTTCAGG TATCTGGCCG GTGATGCTCA GCAGGGACAA
CTTAATATCG AGTATTTGGG TAACGATGAT ATGTTAGCTA ACTCGCCTAA CCGTTATCTT
TATCACTGGG AACATCAGGG TGCAATCGAT GAAAACTGGC GTGTGCTCGC TAACTACACA
GATGTATCGG ATAACAACTA CTTCAATGAT TTAAAATCAG ATGTCCAGCG CGCAACGGAT
AATCAGTTGA CTCGAATTGG TGAAGTCAGC TATTTCGAAA AAAACTGGGA CTTCAACGCC
AGAGTACAAG ACATTAAAGT GCTGGGTGAA GATGAAAAAC CTTATCAGGT GATGCCACAA
TTTGGTTTTA ACTACCGTTC TCCTGATGTT TGGAAAGGCT TAGATTTTGA TTTCTTGAGT
GAAGTGACTA ATTTTGAACA TGAAGACAGT GACCAAGCGA CGGCAACTCG GCTTCATTTT
GAACCTAGTA TCTCTTTACC GCTTCATGGG CCAGCCGGGT CGCTGACCAG CGAATTAAAG
CTACTACAAA CCTACTATTG GCAGGACGAT GCCCGTACCA ATGCCAATAC AGAGCTCGAT
AGCAGTGTGA CCCGTACTCT GCCACAGGTG CGGATCCATG GGCAGGTCAA CTTCGAGAGA
TTTACCGATT ACTTTAACGA AAACTACCGC CAGACTTTAG AGCCTCAATT CCAGTACCTC
TACGTGGGTT ATGAGGATCA ATCGAATATT GGTATTTATG ATACGGCGCA GCTTCAGGAA
GATTACTTCG GGCTATTTCG TGAGCGACGT TTTTCAGGTC TGGATAGAGT CGCCGATGCT
AATCAGATGA CATTAGGTCT GACGACACGA TTATTTGATT CACATAATGT TGAAAAATTT
AAGTTCAGCC TGGGTCAGAT ATTTTACTTC CAGGATAGTC GGGTCGGTAT AGCGGATTCA
ACTTTTCAAG GTGAAACGTT TACCCAGGAA AATACTTCAA ACTCAGTGTT AGCTGCCGAA
TTGAATACTC AACTCTACCA GGACTGGTAT ATGAGTGGTG CAATTCAGTA CGATACGACC
GAGAGTGAGA ACAAGAAGAG TGAGGTAACC CTCGACTTCC GTCCGGGTGC CAACAAGCTA
TTACAATTTA GTTATCGTTA TGTCCCCGAC CTGCTAAACA GCAACACAAA CGAGTCGGTC
AATATTTCGC AGGCCGGCAT GCGGGGAGCA TGGCCACTGA ATGATAGTCT TTACTTGGTC
GGTAACTGGT ATTACGATCT TAACGAGAGC CGTAGTGTTG AAACCTACGC AGGCTTTCAG
TATGAATCCT GCTGTTGGGC CATACGTTTA AGTTATCATT ATCGAATCAA GACAAATTAT
GATGAGGATT ATAATCCTGT ATTGGATAAT AGAGAGCTTT TTGAGAGCGG TTTATATCTC
AACTTTGTAA TAAAAGGGCT CGGTGGCTCG GGTCCATTAG GCGTATCGGA TATGCTTAAC
GATGGTCTGT TTAATTACCG AAAGCCGCTT TACCTGAAAA ACTAG
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| Protein sequence | MQIRYLLALS LLPQLVLAEE TPATSNSDTQ CIVEPPVPRL TPPENSDGKI DLQEIRIISD
RSEAQMGKQA KFNGDVSFSQ GGRNIAADEA ILDQEAERLD ANGNLVFQDQ MFTVTADSLT
AEMRSNSATL SGAQYWLHGQ QIHGDAEKLE ITPDNNLHLT KTNFTTCPPE DTSWLLEAET
IKIDSKEEWG ELWDAKLKIG NVPVLYIPYM TIPVSDKRKS GFLFPTFSTS TTNGVEVATP
YYWNIAPDYD LTFTPHYMSA RGLFLKSDFR YLAGDAQQGQ LNIEYLGNDD MLANSPNRYL
YHWEHQGAID ENWRVLANYT DVSDNNYFND LKSDVQRATD NQLTRIGEVS YFEKNWDFNA
RVQDIKVLGE DEKPYQVMPQ FGFNYRSPDV WKGLDFDFLS EVTNFEHEDS DQATATRLHF
EPSISLPLHG PAGSLTSELK LLQTYYWQDD ARTNANTELD SSVTRTLPQV RIHGQVNFER
FTDYFNENYR QTLEPQFQYL YVGYEDQSNI GIYDTAQLQE DYFGLFRERR FSGLDRVADA
NQMTLGLTTR LFDSHNVEKF KFSLGQIFYF QDSRVGIADS TFQGETFTQE NTSNSVLAAE
LNTQLYQDWY MSGAIQYDTT ESENKKSEVT LDFRPGANKL LQFSYRYVPD LLNSNTNESV
NISQAGMRGA WPLNDSLYLV GNWYYDLNES RSVETYAGFQ YESCCWAIRL SYHYRIKTNY
DEDYNPVLDN RELFESGLYL NFVIKGLGGS GPLGVSDMLN DGLFNYRKPL YLKN
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