| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0953 |
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| Symbol | |
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| ID | 5611266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1136876 |
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| End bp | 1137847 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931801 |
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| Product | trans-hexaprenyltranstransferase |
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| Protein accession | YP_001472692 |
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| Protein GI | 157374092 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0940385 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTAA ACGCCATTCG TCAGTTAGCC GATAACGATA TGCAAAACGT TAACAAGCTA
ATATACAAAC AACTAGAATC TGATGTCGCC CTAATCAATC AGTTAGGTTT CTACATTATC
AATGGTGGTG GTAAGCGCAT GCGTCCACTA CTATCTATCC TGGCAGCTCG TGCCATCGAC
TATAAAGGTG AAGCACACCT TAAGCTGGCG GCAATTATCG AGTTTATCCA TACCGCTTCG
CTGTTGCATG ATGATGTTGT CGATGAGTCC ATGTTGCGCC GCGGCAGAGA GACGGCCAAT
GCACTCTTTG GTAACAGCGC AAGCGTATTG GTAGGCGACT TCCTCTATAC ACGTTCGTTT
CAGATGATGA CTGAACTTGG CAACATGGAA GTCCTTGAAG TGCTTGCCGA TGCCACGAAT
GTGCTTGCCG AAGGTGAAGT ATTGCAGCTA ATGAACTGTA ATGACCCTGA CACGACTGAA
GAGAGTTACA TGCGTGTCAT CTATTGTAAA ACAGCTAAAC TCTTCGAGGC TGCCACACGT
TTAGCCGGTG TACTTGCACA AAGCCCTATC GAAGCGCAAA ACGCACTGGC CGATTACGGG
AAGTTCTTAG GGACGGCATT CCAGTTAACC GATGATCTAT TGGACTATAC TGCCGATACC
GAAGAGTTAG GCAAGAATAT TGGTGATGAT CTTGCTGAAG GTAAGCCAAC TCTGCCACTT
ATTTATGCCA TGGCACACGG TACTGAAAAA GAGCAAGAGT TAATCCGCAC GGCAATAGAA
AAAGGGGATG GTACTCAGAA TATTGAAGAG ATCCTCAATG CATTGCACAG CTGCGGTGCC
TTAGACTATA CATTCAGGCG CGCACTAGAG GAGTCTGATA AGGCAATAGA AGCCTTGTCA
ATCATCCCTG AGAGTGATTA CAAACAAGCA CTGATATCAT TAGCTAAGAT TGCCGTAGAG
CGTAGCAACT AG
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| Protein sequence | MDLNAIRQLA DNDMQNVNKL IYKQLESDVA LINQLGFYII NGGGKRMRPL LSILAARAID
YKGEAHLKLA AIIEFIHTAS LLHDDVVDES MLRRGRETAN ALFGNSASVL VGDFLYTRSF
QMMTELGNME VLEVLADATN VLAEGEVLQL MNCNDPDTTE ESYMRVIYCK TAKLFEAATR
LAGVLAQSPI EAQNALADYG KFLGTAFQLT DDLLDYTADT EELGKNIGDD LAEGKPTLPL
IYAMAHGTEK EQELIRTAIE KGDGTQNIEE ILNALHSCGA LDYTFRRALE ESDKAIEALS
IIPESDYKQA LISLAKIAVE RSN
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