Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0948 |
Symbol | |
ID | 5610879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1131459 |
End bp | 1133150 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931796 |
Product | gamma-glutamyltransferase |
Protein accession | YP_001472687 |
Protein GI | 157374087 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0405] Gamma-glutamyltransferase |
TIGRFAM ID | [TIGR00066] gamma-glutamyltranspeptidase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTAAAA AATTAATAAT AACTGCAACC TTTTTCTCCA TGGGTGCGTG TGCCATGGAT AGAGTTACTG GCGAGTCATT CGCCACACGT TCAGAGGTCT ACGCCACTAA TGGCATGGCG GCGACGAGTC AGCCATTAGC CACACAGGTT GCGCTCGATA TTCTTAAGCT GGGTGGCAGC GCCGTCGATG CTGCCATTGC CGCCAACGCT ATGCTCGGGC TCGTCGAACC TACAGGTGCT GGGATCGGTG GCGATCTATT TGCCATTGTC TGGAGCGCTA AAGATAAACG CCTCTATGGA CTCAACGCCT CAGGCAGAAG CCCCAAGAGC CTTACCTTAG ACAAAATACA AGCCTTAGGG TTAGACTACC TTCCACCTTA TGGACCTATT CCTGTCTCTG TTCCCGGTGC TGTTGACGGC TGGTTTGAGC TGCACGAGAG ATTTGGCAAG TTAGCTATGT CAGTAAATTT AGCGCCTGCA ATCGACTACG CCCGTAAAGG CTTTCCAGTC TCTGAATTAA TTGCTTACTA TTTAGCGCGT AGTGCCACAA AGTTAGCCAT ATTCCCCGGG TTCAAAGAGA CTTATATGCC TAGCGGCGCC ATGCCTGAAG TTGGAGATAT TTTTAAGAAT CCTGCACTGG CATCGACCTA TGAGAAAATA GCGGAGAAAG GGCGGGATGC TTTTTATAAA GGAGATATTG CCAGGACTAT TGCCAGCTAT ATGGAAGCGC AGGGAGGTTA CCTCTCATAC GATGATTTAA GTGGACACTC CAGTGAATGG GTTGATCCTG TTTCGGTTAA TTATCGTGGC TATGATGTTT GGGAGTTACC ACCCAATGGT CAGGGAATTG CCGCGCTGCA GATCCTCAAA ACCCTGGAGC CCTTTGATCT AAAAGGGATG GGGCAAGATA GCGCCGAATA TACACACCAT TTTGTTGAGG CCAAAAAGCT GGCCTTTGCC GACCGAGCAA AATTTTATGC CGATACGGCG TTCAATAGCA TTCCGGTTTC TGAGCTTCTA AGTGAAACAT ACAATTATCA ACGCTCAACA TTAATTAATG CTAACAGGGC CGCTAAGCGT GTCGATGCCG GCCATCCGGC GTTGCAGCAT GGTGATACTG TGTACCTGAC TACCGCCGAT AGGGAGGGCA ACATGGTCTC TCTTATTCAG AGTAATTATC GCGGTATGGG CTCAGGGATG ACGCCACCTA GTTTAGGATT TGTTCTGCAG GACCGTGGTC AACTGTTCGA CCTTAAGCCG GGACGCTTTA ATAGCTACGC CCCGGGTAAG AGGCCTTTTC ATACCATCAT TCCGGCATTT GTCACCAAAG ACAATAAACC TTGGTTGAGT TTTGGAGTCA TGGGAGGGGC TACTCAGCCG CAGATGCATG CACAAGTTTT AATCAATCTG ATCGACTTTG ATATGAATTT GCAGGAAGCG GGAGACGCAC CTAGAATTCT TCATACTGGC TCGTCTCAGC CGACGGGAGA GCAGATGTTA GATGGTGGAT ATATCAGCTT AGAGTCAGGC TTTGATATGA AGGTACGCAG AGAACTGCAG AAGAAAGGGC ATGTTATTCG CGATAGTCTT GGTGCCTTTG GTGGATATCA AGCCATTTCG ATAAATACTG AAACAGGTGT TTATAGAGGG GCATCAGAGA GTCGGAAAGA TGGCCAAGCG GCAGGATATT AG
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Protein sequence | MLKKLIITAT FFSMGACAMD RVTGESFATR SEVYATNGMA ATSQPLATQV ALDILKLGGS AVDAAIAANA MLGLVEPTGA GIGGDLFAIV WSAKDKRLYG LNASGRSPKS LTLDKIQALG LDYLPPYGPI PVSVPGAVDG WFELHERFGK LAMSVNLAPA IDYARKGFPV SELIAYYLAR SATKLAIFPG FKETYMPSGA MPEVGDIFKN PALASTYEKI AEKGRDAFYK GDIARTIASY MEAQGGYLSY DDLSGHSSEW VDPVSVNYRG YDVWELPPNG QGIAALQILK TLEPFDLKGM GQDSAEYTHH FVEAKKLAFA DRAKFYADTA FNSIPVSELL SETYNYQRST LINANRAAKR VDAGHPALQH GDTVYLTTAD REGNMVSLIQ SNYRGMGSGM TPPSLGFVLQ DRGQLFDLKP GRFNSYAPGK RPFHTIIPAF VTKDNKPWLS FGVMGGATQP QMHAQVLINL IDFDMNLQEA GDAPRILHTG SSQPTGEQML DGGYISLESG FDMKVRRELQ KKGHVIRDSL GAFGGYQAIS INTETGVYRG ASESRKDGQA AGY
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