| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0939 |
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| Symbol | |
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| ID | 5610500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1121661 |
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| End bp | 1123433 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931787 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001472678 |
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| Protein GI | 157374078 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCTT CTCTCTATTT TGATGGCCCT ATCGATAAAC TGAATTGGAA AGTCCTTAAG
TTGCTCTGGC CGTATCTTTT CGAGTTCAAA TCGCGAGTGG GCTTAGCCAT GCTGTGCTTG
ATTATTGCCA AAATCGCCAG CGTTACTCTG CCATTTGTAT TGAAGTCATT GGTCGACACT
TTAAGTTCGG CATCGACTGA GCAGATGATA AGCGTGCCGA TAGCCCTTGT TATCGCTTAT
GGTTCATTAC GATTACTGAA TACCTTGATC TCTGAGGTGA GGGATACGCT GTTTGGCAGA
GTAACCGAGC GTGCAATTAG GCGGTTAGGG CTGTCCGTTT TTGAACATCT GCATCGATTA
GATCTAGAGT TTCACCTAGA GCGAAGGACC GGTGGCTTAT CCAGAGATAT AGAGAGAGGC
ACCAGTGGCA TTAATTTTTT GATGCGATTT ATGGTGTTCA ATATCGTGCC AACAATTCTG
GAGATAGCCT TGGTTGTTGG GATCCTGTTT TATAATTATG GTATAGCATT CGCTGCGATA
ACGTTAGCTT CGGTGGCGGC ATATGGACTA TTTTCCATTT TTGCGACCGA GTGGAGAACG
GAGTTTGTTC GTGAAGCCGC CAGGGCTGAT TCTCGATCCA ACTCTCGTGC GATCGATAGC
CTTCTTAATT ATGAAACAGT AAAATATTTT AATAATGAAA CCTATGAAGC TAATCGCTAC
GACTGTGCAT TAGCCGACTG GGAAGATGCA AAGCGAAAAA ACCGCCTGTC TCTTTTTGCA
CTAAATGCCG GACAAGCGTT AATCATCTCT GTTGCTATGA CGTTAATGTT AGCTCTCGCA
GCTTACCATG TTGTTGAAAA TACGATGACT ATAGGTGATT TTGTATTGGT TAATGCGTTT
ATGATGCAAC TTTTTATACC ACTTAATTTC TTAGGTTTTG TCTATCGCGA AATCCGGGGG
GCACTGGCTA ATATTGAGAG AATGTTTGGC CTGTTGGATC GCGTACCTCT TATCGAGGAT
AAAGCCGATG CTAAAGATAT TAAGCTTTCG CGTGGAGAAC TGAAGTTTGA CAAGGTGAGT
TTTAGTTACG ATACCAGGCC TATTTTGAAT AGTGTTAGCT TTACAGTCTT GCCAGGGCAG
AAGATTGCAA TCGTGGGTGA TAGTGGCGCA GGTAAGTCGA CCATAGTTAA ACTACTCTTT
CGTTTTTATG AGGTGTCATC GGGGAGTATT TCTCTGGACG GCGTAAAAAT TGATGAATTA
ACCCAGGACG CGTTACGACA AGCTATTGCT ATTGTGCCTC AAGACACGGT TTTATTTAAT
GACTCCCTGT TAGAAAATGT TCGCTATGGT AGACCCGATG CGAGTGATGA GGAGATCGCG
GCAGCGGTTA AGATGGCTCA CCTTTCTCAT TTTATTGAGG CTCTGCCCGA TGGGTGGCAT
ACAAAGGTGG GGGAAAGAGG CTTAAAGTTA TCCGGTGGAG AGAAACAGCG AGTCGCTATT
GCCAGAGCCA TACTCAAGGG CTCCCCTCTG CTGGTATTTG ATGAGGCAAC GTCTTCTCTG
GATAGCCATT CTGAACAGGC GATATTGAAT GCCTTGAAAG AGGTGGCAAA AGGCCATACC
AGTTTGGTTA TCGCGCACCG TCTGTCTACC ATTGTCGATG CAGATCAAAT TGTGGTGTTG
AGTAAAGGCA AGGTTGTTGA AACAGGTGAT CACCTATCTC TGTTAGCCAA TAATGGTTTG
TATGCGAGAC TGTGGAATAT TCAAAATCAA TGA
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| Protein sequence | MRPSLYFDGP IDKLNWKVLK LLWPYLFEFK SRVGLAMLCL IIAKIASVTL PFVLKSLVDT
LSSASTEQMI SVPIALVIAY GSLRLLNTLI SEVRDTLFGR VTERAIRRLG LSVFEHLHRL
DLEFHLERRT GGLSRDIERG TSGINFLMRF MVFNIVPTIL EIALVVGILF YNYGIAFAAI
TLASVAAYGL FSIFATEWRT EFVREAARAD SRSNSRAIDS LLNYETVKYF NNETYEANRY
DCALADWEDA KRKNRLSLFA LNAGQALIIS VAMTLMLALA AYHVVENTMT IGDFVLVNAF
MMQLFIPLNF LGFVYREIRG ALANIERMFG LLDRVPLIED KADAKDIKLS RGELKFDKVS
FSYDTRPILN SVSFTVLPGQ KIAIVGDSGA GKSTIVKLLF RFYEVSSGSI SLDGVKIDEL
TQDALRQAIA IVPQDTVLFN DSLLENVRYG RPDASDEEIA AAVKMAHLSH FIEALPDGWH
TKVGERGLKL SGGEKQRVAI ARAILKGSPL LVFDEATSSL DSHSEQAILN ALKEVAKGHT
SLVIAHRLST IVDADQIVVL SKGKVVETGD HLSLLANNGL YARLWNIQNQ
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