| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0934 |
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| Symbol | |
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| ID | 5610518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1116200 |
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| End bp | 1117450 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931782 |
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| Product | Rh family protein/ammonium transporter |
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| Protein accession | YP_001472673 |
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| Protein GI | 157374073 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0004] Ammonia permease |
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| TIGRFAM ID | [TIGR00836] ammonium transporter
[TIGR03644] probable ammonium transporter, marine subtype |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGATT TAGTCAAACT AGGTGTGACG GTTTCAGAAT TACGATTTGC GTTAGATACT
TTTTACTTTT TAATTTCTGG TGCTTTAGTG ATGTGGATGG CGGCTGGGTT TGCCATGCTT
GAGGCTGGCC TTGTCAGGTC TAAAAACACG ACCGAGATCT TAACTAAGAA CGTCTGCCTC
TACTCCATCG CCTGCGTGAT GTATCTGATA GTCGGGTATA ACATCATGTA TGTAGATAAT
GGCGAAGGCG GCTGGTTACC ATCTATCAGT ACCTTAATTG GAATTCAGGC GAGTGATGCC
GACCATGCTC TGGAGTCGGA TTTCTTCTTT CAAGTTGTCT TCGTCGCCAC GGCGATGTCA
ATCGTGTCTG GTGCAGTTGC CGAGCGTATG AAGCTCTGGG CATTCTTGGC TTTTTCCGTC
GTAATGACGG GTTTTATCTA TCCGGTAGAA GGTTATTGGA CCTGGGGAGG AGGCTTTCTC
TCTGAAGCTG GATTTGTCGA TTTTGCCGGT AGTGGTATCG TGCATATGGC TGGTGCGGCT
GCAGCCATTG CCGGTGTACT CCTACTGGGT GCACGTAAAG GTAAATACAG TGCTAACGGT
CAGGTGAATC CTATTCCGGG TTCAAACTTA CCCATGGCGA CATTAGGCAT GTTTATTCTA
TGGATGGGCT GGTTCGGTTT CAATGGTGGC TCGCAATTGC TGTTATCAGA CGCTGAGAAC
GCAACGGCTG TCGCTAAGAT ATTCCTGAAT ACTAATTCTG CAGCGGCATT CGGGGCGGTA
TCTGCGTTAG TCGTATGTAA GGTGGTTTGG GGAAAGGCTG ATCTGACCAT GATACTAAAC
GGCGCGTTAG CCGGACTGGT TGCTATTACG GCGGACCCAT TGTCACCTTC TATCGCCTTT
GCCGGCGTCA TAGGCCTTGC TGCTGGTGGT CTGGTTATCT TCTCTATTGT GGCGTTAGAT
AGGGTTAAAA TTGATGATCC GGTGGGCGCT ATTTCAGTTC ACGGCGTTGC AGGTTTCTTC
GGTTTGATCT TGGTTCCTTT CTCAAATGCT GATGCCACGA TTCTGGGGCA ACTTTATGGC
GCAGGTGTTA TTTTTGCCTG GGTATTTGCG GCCTCATTTG CAGCCTGGTA TCTGTTAAAG
CTGACTATGG GGATCCGCGT TAGCGAAGAG GAGGAGTATA AGGGAATGGA TGCCTCAGAT
TGTGGTATCG ACGCTTATCC TGAATTTGTT TCGGTGAAAA GCGCACGCTA A
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| Protein sequence | MEDLVKLGVT VSELRFALDT FYFLISGALV MWMAAGFAML EAGLVRSKNT TEILTKNVCL
YSIACVMYLI VGYNIMYVDN GEGGWLPSIS TLIGIQASDA DHALESDFFF QVVFVATAMS
IVSGAVAERM KLWAFLAFSV VMTGFIYPVE GYWTWGGGFL SEAGFVDFAG SGIVHMAGAA
AAIAGVLLLG ARKGKYSANG QVNPIPGSNL PMATLGMFIL WMGWFGFNGG SQLLLSDAEN
ATAVAKIFLN TNSAAAFGAV SALVVCKVVW GKADLTMILN GALAGLVAIT ADPLSPSIAF
AGVIGLAAGG LVIFSIVALD RVKIDDPVGA ISVHGVAGFF GLILVPFSNA DATILGQLYG
AGVIFAWVFA ASFAAWYLLK LTMGIRVSEE EEYKGMDASD CGIDAYPEFV SVKSAR
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