| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0910 |
|---|
| Symbol | |
|---|
| ID | 5611338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1089193 |
|---|
| End bp | 1090962 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640931758 |
|---|
| Product | alkaline phosphatase |
|---|
| Protein accession | YP_001472649 |
|---|
| Protein GI | 157374049 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000101698 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGT CTTTTTCACG TAGGGATTTT CTGGCTATGT CGGCCAAAGG TGTGGGCGCC
GCAGTTGTGT CATATGGCTT AATGGGGTGC AGTAGCAGCG ATGACGATAC CAATGTTAGC
CCTGTCAGTT TTGTCCATGG CATCGCCAGT GGCGATCCCA GTCATAGCGC TATCATTCTC
TGGACTCGAG TGACACCGGA GGCGGAGGGT GAGGTAAAAG TTGCCTGGGA GGTGGCTACC
GATGAAGGCT TTACCGATCT GGTGACAAAC GGTGAAACCA CGACCACGGC AGAGCGAGAT
TATACGGTTA AGGTTGATGC CATAGGGTTA GCGGCGGGGA GCCGTTATTA CTATCGCTTC
TCCTCTGGAG AGACTGTCAC CGAAACGGGA ATGACCCGCA CCTTACCTCA AGGCGCCGTG
GACTCGGTTA AGCTGGCGGT GATGTCGTGC GCTAACTTTC CAGCCGGTCA CTTCAATGCT
TATGAGCTCG CAGCTCAGCA AGAGGAGCTG GATGCGGTGC TCCACCTTGG CGATTATATC
TATGAATATG CCCGTGGTGA GTATGCCAGT GAGAATGCGG CCGAGCTAGG TCGTGAAGTG
CTGCCAGAAG GCGAGCTATT TAGCTTAAGT GATTATCGCA CTCGTTATGG CCAGTATCGT
GGCGATGGCA GCTTGCAAAA ACTCCATGCA AAGGTGCCGT TTATTACCGT GTGGGACGAT
CATGAGATTG CTAACGATGC CTGGTCCGAT GGCGCCGAGA ATCATAACGA AGGCGAAGGG
GATTTTGCTG ACCGTAAAAT TGGGGCGCTG CAAGCCTATT TCGAGTGGTT ACCAATTCGT
CCGTGGCGAG AAGGTAATCA CGAGGAGATC TACCGTTCGT TCAGTTTTGG CGATCTGGTA
GACCTGCATA TGTTAGACAC TCGTGTGTTA GCCAGAGATA AGCCTTTGGA CTATGTCGAC
TATATCGATC CGGCAACTCA GGCCATGGAT AGTGCCAGGT TTATGTCCGA TGTGACCAGC
AGTGATCGAT CTATGTTAGG TCAGGAGCAG TTGCAATGGT TGCAGGGAAG CCTGTTAACC
GCAACGGGCA AGTGGCAACT GTTGGGTCAA CAGGTATTGA TGGGCAAGAT GTTACTGCCG
GCGGCGATCG CGATGCAGAA GTTGAGCATT GCCGAGTTTG CCGAGTTAGG GGCGATAGCA
CAACTCGCTG CCCGAGCTCA AGCCAGCGAT CCAACTCTAA CCGCCAGCGA GTACAGTTTC
CTTATCGGCA ATCAGCATAA GTTAACGCCT GAGGCGATGG CGTTACTACA GATGCCAAAT
GTGCCTTATA ACTTAGATGC GTGGGATGGT TATGCCTATG AGCGTGAGGT TATCTTAGCC
ACGGCTAAGT CTAAGGCGTT AAATCTTGTT GTGATAGCGG GTGATACCCA TAATGCCTGG
GCTAATGAGC TTACAGACGC AGCTGGCGAT GCCGTTGCTG TCGAATTTGC GACCAGTTCT
GTCTCCTCTC CCGGATTGGA GTTTTACTTA GGGATCCCGG AAGATCAACA GGCGGTAACC
GAGGCGGGGA TCACCCAGAT GGTCGACGGA CTTAAGTACA CTAACCTGCG TGATCGCGGT
TTTATGGTGC TAACATTTAC CGCAGAAGAG GTGCGCAGTG ATTGGCATTA CGTCGATACC
ATCTTATCGA CGGAGTTCGG TGAAGATATG GATAAGCTAT TTAGTGCCGT CAGCCAAATT
GGCTCACCTC AAATCATGCC AGTCAGCTAA
|
|---|
| Protein sequence | MKRSFSRRDF LAMSAKGVGA AVVSYGLMGC SSSDDDTNVS PVSFVHGIAS GDPSHSAIIL
WTRVTPEAEG EVKVAWEVAT DEGFTDLVTN GETTTTAERD YTVKVDAIGL AAGSRYYYRF
SSGETVTETG MTRTLPQGAV DSVKLAVMSC ANFPAGHFNA YELAAQQEEL DAVLHLGDYI
YEYARGEYAS ENAAELGREV LPEGELFSLS DYRTRYGQYR GDGSLQKLHA KVPFITVWDD
HEIANDAWSD GAENHNEGEG DFADRKIGAL QAYFEWLPIR PWREGNHEEI YRSFSFGDLV
DLHMLDTRVL ARDKPLDYVD YIDPATQAMD SARFMSDVTS SDRSMLGQEQ LQWLQGSLLT
ATGKWQLLGQ QVLMGKMLLP AAIAMQKLSI AEFAELGAIA QLAARAQASD PTLTASEYSF
LIGNQHKLTP EAMALLQMPN VPYNLDAWDG YAYEREVILA TAKSKALNLV VIAGDTHNAW
ANELTDAAGD AVAVEFATSS VSSPGLEFYL GIPEDQQAVT EAGITQMVDG LKYTNLRDRG
FMVLTFTAEE VRSDWHYVDT ILSTEFGEDM DKLFSAVSQI GSPQIMPVS
|
|---|
| |