| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0901 |
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| Symbol | |
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| ID | 5613960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1077198 |
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| End bp | 1078106 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931749 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472640 |
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| Protein GI | 157374040 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000228882 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCTCA GAGTGATTGG CTACTTCATC GACATCGTCG ATTCTGGCGG CTTTGCAAAA
GCCTCTGAAA AAATCCATAT CACTCAACCC GCACTCTCTA AGGCGATCAT TGGGCTCGAG
CATGAGTTGG ACTTAACCTT GATCGAGCGA GGTAAACGCG GCACCCAACT CAAGCTGACA
TCCGCAGGTG AAGTGGTCTA TCGCCACGGT ATCGAGCTCT TAGCTGGAAG ACATAGGATG
CTCAATGAGC TGGCCTCTCA ACGGGATTTA ACCTCGGGAG AGCTAAGGCT TGGTCTGGCT
CCGCTTGGCA GCGCCGAGCT TTTTGCTCCC GTGATAGCCA AGTTCAAAGA CAGTTACCCT
AAGATTGAGA TGAATCTGTT CGTACGGGGA GGAGTCGAGC AAACCCTCGC GCTTCAAAAA
GGAGAGATTG AGCTGGCAAC GGGGATAATC TCATTCGACA AAGAGTTCGA CGGGATCAGA
ATCCACGAAG ACCCTATGGT CGTCGTCCTG CCCAAGAATA ATCTCCTGGC TCACGAAGCC
TCCCTTCAGC TTTGCCAAAT ATCCGACATA GCCCAGATCA TGTTCGAACA TGATTTTGCC
CTTTATGGTC AGGTATTCGA CGCCTGTGAG AAAGCGGGCT TCACCCCAAA AAATATCACC
CGTGTGAGTC ACCCCGATTT TGGTATCGCT TTGGTGGCTG CCGGAGCCGG CACTATGGTG
CTTCCCAAGC TGATAGCCGA ACGACATAGC GTAAGCGGTG TTGTCCATGT GCCATTGAAA
AGCTCCGAGC TGTATTGGGA ACTATCCCTA TACTGGCAAA AAGGAAAGCA GCTCTCATTC
GCAGCCCAAG CTATGCTTAA CATGGTGAAA GAGCGGTTTG GTACCCACAA ACAAAGCGCT
GAAACCTGA
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| Protein sequence | MDLRVIGYFI DIVDSGGFAK ASEKIHITQP ALSKAIIGLE HELDLTLIER GKRGTQLKLT
SAGEVVYRHG IELLAGRHRM LNELASQRDL TSGELRLGLA PLGSAELFAP VIAKFKDSYP
KIEMNLFVRG GVEQTLALQK GEIELATGII SFDKEFDGIR IHEDPMVVVL PKNNLLAHEA
SLQLCQISDI AQIMFEHDFA LYGQVFDACE KAGFTPKNIT RVSHPDFGIA LVAAGAGTMV
LPKLIAERHS VSGVVHVPLK SSELYWELSL YWQKGKQLSF AAQAMLNMVK ERFGTHKQSA
ET
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