| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0878 |
|---|
| Symbol | |
|---|
| ID | 5613937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1046084 |
|---|
| End bp | 1046824 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640931726 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472617 |
|---|
| Protein GI | 157374017 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3137] Putative salt-induced outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000368102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TGCTTATTGC ATCTGCTATT TTAATGGCTG CACCTTTTGC TGCTCAAGCG
GGTGCTAACT TTGTCGAAGG CGATAAAACA TTCGGCGGAG ATGCCGAGCT GGGTGCAACG
CTGACTACCG GTAATACCGA AACCACATCG GTTAAAGGCC GTCTTGATAT GAAGCATGAA
CTGGGTAACT GGGAAAACCA GTACCTGTTG GAAGCTTTAT ATAAAGAGGA CACCGGTGAG
GTGACGGGTA AGCGTTACTA CGGCTTAATT CAGGCGGATT ATAAGTTCGA TGAAAAGAGC
TATACGTTCG TTAACGGTAA CCATGAGATA GACCCATTTA CCGGTTTCGA TTCAAAATCT
ACAGTCTCTG CCGGTTATGG TCATAAATTT ATCGATACAG GCAAGACCCT TTTCAATGTT
GAAGTCGGTC CGGGTTATCA GTATAAACGT CTGGACGATG AAAGCGCTGC GGCTGCCGGT
TACGAAACTG AGGATAGCTG GGTTGCTCAT GGTGTGGTTA ACTTTGAGAA GCAGATAACA
GAGTCTTCAA AGTTTAAGCA GATGTTTGTG GCTGACTATG GTGACAGTTT AGAGGGGCGT
TCGGAAACTT CTATCACAGC TAACATTATC GGAGCACTGG CGATGAAGTT TGCCGTTATT
GTCCGTTATA ACAGTGAGCC GTTAGACGAT AAGAAAAGCA CAGATACCGA AACTAATATG
ACCTTGCTGT ATGCATTTTA A
|
|---|
| Protein sequence | MKKLLIASAI LMAAPFAAQA GANFVEGDKT FGGDAELGAT LTTGNTETTS VKGRLDMKHE
LGNWENQYLL EALYKEDTGE VTGKRYYGLI QADYKFDEKS YTFVNGNHEI DPFTGFDSKS
TVSAGYGHKF IDTGKTLFNV EVGPGYQYKR LDDESAAAAG YETEDSWVAH GVVNFEKQIT
ESSKFKQMFV ADYGDSLEGR SETSITANII GALAMKFAVI VRYNSEPLDD KKSTDTETNM
TLLYAF
|
|---|
| |