| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0858 |
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| Symbol | |
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| ID | 5613420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1022469 |
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| End bp | 1023740 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931706 |
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| Product | aromatic amino acid permease |
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| Protein accession | YP_001472597 |
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| Protein GI | 157373997 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0814] Amino acid permeases |
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| TIGRFAM ID | [TIGR00814] serine transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGAAG AAGCGATTAA TACCCAAGTG CAAGAAGCTG GCCGTCAGGG TTGGACACGT
CAGGATACAA CTTGGATGTT GAGTCTATTT GGCACCGCGG TAGGTGCAGG TATTCTTTTC
CTACCAATTA ATGCCGGTAT GGGAGGCTTT TGGCCGTTGG TCATGATGGC GGTCATCATC
GGTCCTATGA CCTATCTGGC TCACCGTGGT TTGTCTCGAT TTGTCTGTTC TTCACAGAGG
GAGAGCAGCG ATATCACTCA CGTAGTTGAA GAGTATTTTG GTGTTGGGGC CGGTAAGGCG
ATAACCTTAC TTTACTTCTT TGCTATCTTC CCAATCGTTT TGATCTATGG TGTCGGTATT
ACCAACACTA TCGATAGTTT CATCGTTAAC CAACTTGGAA TGGCTTCACC TCCACGTTGG
ATATTATCGG GTGTGCTTAT CTTGGGTATG ATGTCGGTGA TGGTTTCCGG CGAGAAGTTC
ATGTTGAAAG TGACTCAATT CCTGGTATAC CCACTGGTTG CAATTTTGGC CTTTATGTCT
TTCTACCTTA TTCCTAGCTG GAAGATGGAT GCACTGACAC AGGTGCCTGC TGCCGGAGAG
TTCTTAGGTA CAGTTTGGCT AACCATTCCG GTACTCGTGT TTGCTTTTAA CCATTCTCCT
GCCATTTCAC AGTTCTCTGT CTCTTTGAAG CGTGAGCACG GTAAGAATGC ATCAAATAAA
GCCGATGTGA TTCTACGTAA TACAACTATG ATGTTGGTTG GTTTCGTGAT GCTGTTCGTC
TTCTCTTGTG TGCTTTCCCT AAGCCCCGAG CAGCTTGCAG AGTCTAAAGA GCAGAACTTA
GCGATCCTAT CTTATCTGGC AAACGTTCAT GAGAGCGGTT TTGTGAGCTA CTTTGGTCCT
ATCATTGCGA CTATTGCAAT TCTGTCTTCT TTCTTCGGTC ACTACATGGG TGCTGCTGAA
GGTCTGAAAG GACTTATCAC TAAGCAACTG GCCAGCAGTA AGAAAGAAGT CTCTGGTAAG
AAAGTGGATA AGTTTATTCT TGGCTTCATG TACTTCACCA TTTGGGGTGT CGCCATCATC
AACCCAAGCA TCTTAGGTAT GATTGAAGCG TTAGGTGGTC CAATCATCGC CGCAATTCTT
TACCTGATGC CAATGTATGC TGTTTACAAA GTGCCGGCAC TGAAAGCTTA TCGCGGTCGT
ATCAGTAACA TCTTCGTTGT CATTGCAGGC CTGTTAGCCA TGACGGCAAT TCTATTCGGC
ATGTTGTCTT AA
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| Protein sequence | MQEEAINTQV QEAGRQGWTR QDTTWMLSLF GTAVGAGILF LPINAGMGGF WPLVMMAVII
GPMTYLAHRG LSRFVCSSQR ESSDITHVVE EYFGVGAGKA ITLLYFFAIF PIVLIYGVGI
TNTIDSFIVN QLGMASPPRW ILSGVLILGM MSVMVSGEKF MLKVTQFLVY PLVAILAFMS
FYLIPSWKMD ALTQVPAAGE FLGTVWLTIP VLVFAFNHSP AISQFSVSLK REHGKNASNK
ADVILRNTTM MLVGFVMLFV FSCVLSLSPE QLAESKEQNL AILSYLANVH ESGFVSYFGP
IIATIAILSS FFGHYMGAAE GLKGLITKQL ASSKKEVSGK KVDKFILGFM YFTIWGVAII
NPSILGMIEA LGGPIIAAIL YLMPMYAVYK VPALKAYRGR ISNIFVVIAG LLAMTAILFG
MLS
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