| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0829 |
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| Symbol | |
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| ID | 5612455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 984038 |
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| End bp | 984607 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931677 |
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| Product | alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen |
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| Protein accession | YP_001472568 |
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| Protein GI | 157373968 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0450] Peroxiredoxin |
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| TIGRFAM ID | [TIGR03137] peroxiredoxin |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.520161 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCAAT CAATCATAAA CACCGAAATC AAACCATTCT CTGCAACAGC ATTCCACAAA
GGTGAGTTCG TACCAGTTAC TGAGCAAGAC ATGTTAGGCA AATGGTCAGT TGTTTTCTTC
TATCCTGCTG ACTTCACTTT TGTATGTCCG ACAGAGCTCG GTGACATGGC TGACCACTAC
GAGAAATTGC AGGCGATGGG TGTTGAAGTT TACTCTGTAT CGACCGACAC ACACTTCACC
CACAAAGCGT GGCACGATGC TTCAGATACA ATCAACAAGA TCCAGTATCC AATGATTGGT
GACCCAACGG GTGCTATCAC ACGTAACTTC GGCGTGATGA TTGAAGAAGA TGGTTTAGCA
CTTCGCGGAA CTTTCGTTAT CAACCCTGAA GGTCAAATCA AAGTCAGTGA AGTTCATGAC
CTGGGTATTG GTCGCAGCGC GGCTGAACTT GTTCGTAAAA TCCAAGCGGC TCAGTATGTT
GCTACTCACG ACGGTGAAGT TTGTCCAGCA GCATGGCAGC CAGGTGCTGA GACTCTTGCA
CCTTCACTTG ACTTGGTCGG TAAGATCTAA
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| Protein sequence | MNQSIINTEI KPFSATAFHK GEFVPVTEQD MLGKWSVVFF YPADFTFVCP TELGDMADHY
EKLQAMGVEV YSVSTDTHFT HKAWHDASDT INKIQYPMIG DPTGAITRNF GVMIEEDGLA
LRGTFVINPE GQIKVSEVHD LGIGRSAAEL VRKIQAAQYV ATHDGEVCPA AWQPGAETLA
PSLDLVGKI
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