| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0821 |
|---|
| Symbol | |
|---|
| ID | 5612639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 977891 |
|---|
| End bp | 978568 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931669 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_001472560 |
|---|
| Protein GI | 157373960 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0454843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACT TCGTATACTC ACCACCAACT TCTCCCTGGC TAGAGATAAT CTATCAAGAC
AAAGATATTT TGGTAGTCAA TAAACCCTCA GGCTTGCTAT CCGTTCCCGG TCGGGATCCG
GCTCATAGTG ATAGCATCTT TACCCGGGTA CTAGCCGAAC ATCCTAACGC ACAGATAGTA
CATAGATTAG ATATGGCGAC GTCAGGTGTG ATCGTTGTGG CATTGAGAAA AAGTGCAGAG
CGGGAGTTAA AACGACAATT TCGGGATCGT GAAACGAAAA AGACTTACTA TGCGCGTGTT
GCGGGTCATG TGAAAGCGGA TAATGGTAGC GTCGATCTCC CCTTAATCTG CGACTGGCCT
AACCGTCCAA AACAAAAAGT CGATCACGAT ATAGGTAAAG CTTCACTCAC GCACTTTGAA
GTAATAAGCA GAGCAAAACG ATCGACATTA GTCAAACTGA CACCTATCAC GGGTCGCTCA
CATCAACTAC GTGTACACAT GATGGCGGTA GGACACCCTA TACTTGGCGA TAACTTCTAT
GCAGATCCGT TAGCCAAACG ATTAGCGAGC CGTTTATTAC TGCACGCACA AGAGCTAACC
ATTAAGCAGC CTTACTCGGG TGAGGAGATG ACATTTAACT GTGACACGCC TTTCATGGAG
GCTGAGTCAG AACAATAG
|
|---|
| Protein sequence | MSDFVYSPPT SPWLEIIYQD KDILVVNKPS GLLSVPGRDP AHSDSIFTRV LAEHPNAQIV
HRLDMATSGV IVVALRKSAE RELKRQFRDR ETKKTYYARV AGHVKADNGS VDLPLICDWP
NRPKQKVDHD IGKASLTHFE VISRAKRSTL VKLTPITGRS HQLRVHMMAV GHPILGDNFY
ADPLAKRLAS RLLLHAQELT IKQPYSGEEM TFNCDTPFME AESEQ
|
|---|
| |