| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0819 |
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| Symbol | |
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| ID | 5612005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 973185 |
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| End bp | 977045 |
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| Gene Length | 3861 bp |
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| Protein Length | 1286 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931667 |
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| Product | peptidase S8/S53 subtilisin kexin sedolisin |
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| Protein accession | YP_001472558 |
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| Protein GI | 157373958 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1404] Subtilisin-like serine proteases |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000454384 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAACAA AAGTATCTAT CGCAGTCACG GCCGCGCTAA TTTCGAGTGC CGCCATCGCA
AGCAGTGATT TTTCTGCTAA TAAATATTCT CCTGAGCTAA CCTCTGTAAA CAACTACAAC
AAACCACAAA CATCGAGTCC ATCTCTTGTT GCTCCCCAGC GTTTTATCGT AGAACTCGAG
TCTCCGGCTC TGGCCAAATA CAGGGGAGGC ATTCAACAGC TAGTTGCAAC GGCTCCCGCA
AAGAAAGGTC AAAGAATCGA TGTTCAATCG GCCGGTGCGA AGAGTTACGT AAGCCACCTG
AGCCAAGAGC AAAATGCATT TACCAAAGCC CTTTCAAAGA GTGCACCTAA TGCGAAAGTT
GAGCGTAACT TTAAAACGCT TTTCAACGGT GTGAGTCTTG TTGCTCAAGG AATGACACTC
GAGCAGATTG CCGCAATGCC TGGTGTTAAG TCTGTTTACC CTGAAACCAT GTATGAAACC
AACATGGATG CTTCACATGA AATCATCAAC GATGCGGCCA TGTGGGAAGT GGTTTCAGGC
ATGGAGAATG CGGGCAAAGA TATCCGCGTC GCCGTTATCG ATACCGGTAT TCGTCCTGAA
AACCCTATGT TCTCAGGTGA AGGCTTTACT AAGCCTACGG CAGATATGCC TGCCGATGAT
TATTGCTCGA CGGTAGATAC CAGCTTTTGT AATGACAAGC TAATTGTCGC TCGTTGGTCC
CAGCCAACAT TTGAAGTTTG TGCCGATGAG CACATGAGCC CGCTTGGATA CGGTGGTCAC
GGTTCACACG TAGCAGGTAC CTCTGTTGGT AACAAGATCA GCACGACCTA TAAAGATGTC
GATGTGGATC TCTCTGGTGT CGCTCCCGCC GCATACCTGA TGGTATATAA GGCACTGTTC
ACTAAGACCG ACTGCTCCCG AGGCAGCGGT AGTAACATCA TGCTGATGGA AGCGATGGAG
CATGCGGTTA ATGACGGCGC CGATGTTATC AACAACTCAT GGGGTGGCGG TGCAGGCGGC
GATCCGGCTA ACAGCCCGTA CAAAACCATG TATGAAGCCG CCGAAGCCGC CGGCGTTGTC
GTCGTTACCG CCGCAGGTAA TGACGGTAAT GGCGCACAAA CTATCGGATG CCCGGCCTGT
ATCGAGTCAG GGATTACTGT CGCTAACAGC ACCACCGGTC GCTTCTTCGC TAACAGCTTT
ACAATGGGTG ATGATGAACT GCTCGCCATC GAAGCCAATA ACGAGTTGCT AACTGAGGAT
ATCACTTTAC CTGTAATTGC AGCTGTGAAT ATCGACGCTG ACAATTTTGA AGGGTGTGAT
GCATTCCCGG CAGATTCATT TAAAGATGGT ATTGCGTTAA TTTCACGTGG TGCATGTGCA
TTTAGTGATA AGACTGCGAA TGCGCAGGCC GCCGGTGCTA AGGCCATTGT TGTCTACAAC
AGTAAGCCTG GAGCCCCCAT CAGCATGTAT ATGCCTGATG CTACACTTCC TGGTGTGATG
ATCTCTGATG CCGATGGCGC AGCCGTTATC GAAGGTTTAG AAGAGGGCGT TGCTTGTACT
ATTGGCTCAA CAGTTAAGCG TATCGCCAAC TCGACTTTAG CCGATCTTAT CAATGCTTCG
AGCTCGCGTG GTCCAAACGG TAATCAAAAT ATCCTTAAGC CAGATCTGGC GGCGCCGGGT
ACTTCGATAC TTTCAGCCAC CTCTCCCGAT GAAGATGGCA CTGACTTTAC CACTATGACT
GGTACAAGTA TGGCCAGCCC TCACGTTGCC GGTGCCGCAG CCCTGATGAG TCAACTGCAC
CCGGACTGGA GTGCCAATGA CATCAAGACA GCGTTAACAT CGACCTCTCA TATGGCGGGT
ATACTCGATG ATGATGCTGA AACGGATGCC AACCCATTTG CTATGGGTGC GGGTCGTATG
GATCTTGATG CGGCAGCTAA AGCTGTCTTA ACATTCGATA AGCCATCTGT TGCTTCTGAC
TCTTGTGTCG GTCCATGTAC ATTTACCCGT ACCGTCTATA ACAAGAGCGA TGAAACAACT
TCATGGTCAC TTTCTGCTGC GGCTGACAGC GCCGGGATCA GCATTTCACC AACCACTCTG
GAACTTGAAG CTGGCGCCTC AGCGACATTT ACCGTAACCG TCGACTCGAC GTTCAGTGAA
TATGGCTCTT GGATCTTCGG CAACGTCATG ATCAAGAGTG ATGAAGGCAA GCAAGATGCT
CACCTGCCAC TTGCCGTTAT GGCGAAAGAG TCGAGTGACG CTTCACTTAT CTCAACACTT
ACTACGCAAG CAGATATCAA GGCAAGCGAT GAGTTTCCTA TCAAAGCCGT TGTTAATAAC
TCTATCTTCG AAAATACAGT TACCCTAACG GCTAATGCAC CACAAGGAAC CAAGCTTACC
TCAGAAGATG ATGTGACCGT CTCTATTAGC GGTGCAACAC AGCACGGTTT CGATATTAAT
GAAGATCTGG GACGTATTAC CTGGGTAGGT AAACTCGACT TGCCAGAGAT GAGCTCTATC
AAGGATGTGG GTGGATTCCC GAGCATTATT GATTTAGGGG TTTTACCTCA ACCATGTGAA
AGCGGCTGTG ACGAAACGGC GCTGACATTC AACTCTCTTC CCAGCTTTAA ATACAACGGC
GTGAGCTATG ACAGCATCAC CATGGGCGAT AATGGTTTAG CCATTGTCGG TGGTGGTTCA
ACTTCAGGTA CCTGGAATAA CAAAGAGCTA CCTGACTCTG CCAACCCAAA TAACATCATC
GCACCATTCT GGTCTGATTT CGATCTAGCC GATACTTCAG GTACCGATAC CGGTGGTGGA
GATATGGCTA TCGGGGTATT TACCGGTGGT GACGGCACAA CCTGGTTGGC TCTGGAGTGG
AAAGATGCGC AGCTATATGC AGATGAGTCA AATACTAAAT ATACCTTTAG CATCTGGATA
AAAACAGGCG ATGAAGAGCT GGTATTGTTC AACTACATAG ATGTACCTAA CATGCCTGCA
AATCTGACAA TCGGAGCCGA GAATATCGGT GGTTCGGTTG GTACAACCTT CCACTACAAT
GGGCAAGGTA GTAGTGTAAC CAATGGTGAC GGCGTCATAC TTCAAACATC GACTGCCGGT
AGCGTAAACA TTGACTACAA GGTTAAGTCT ACCGAATTTA ACCCGGGTCA AAGCGACAAC
GTCTCTGTAG ATGAAGAAGC TACATTAGCG TTTAATGTGC TCGATAATGA CATGAAGGAC
CAAAAAATCG CTCATGTTTC AGTCACCGGT GATGGCATGA CAGCCGAAGC TTTGCGTTTA
ATTGATGTGG CTCCTACCGG TGCCCTTGGT AAAGCGATGC TTGTAGATGA GCCATCTAAC
GGTGAAGTAA CACTGAAAGA AGACGGTACT GCTGAGTATA CTCCTGAAGA TGATTTCTTC
GGTAAAGACA GCTTTAGCTA TACCTCTGAA GATGCCGATG GTAATACCGG GAACGCGACT
CTGGTAAACA TCACAGTAAA TAATGTCAAC GATGCACCTA AGGTGAGCCC ATCAGGTATG
TCCAGCACCG AAGGATTCGC TGTTAAAGCA TCGGCCAATG GCAGTGATGT TGATGGTGAT
GATCTGACAT ACACCTGGAC ACAAGTAAGC GGCACGAGTG TTGAGTTTAC CAATGGCGGC
GAAAGTATCG GCTTTACCGC TCCATCTGGC GATCATGAGC TTGTCTTCTC TGTCGTTGCT
TCCGATGGTG AGTTAGAGAG TGAAGCGGGC ACGGCAACAA TCACTGTAAA TTCAGTCAAA
GAGGACACCT CTGGTGGTTC ACTGGGGTGG TTGACTATGC TACTGCTTCC TTTTGCAGGC
CTGCGTCGCC GTAAGCGTTA A
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| Protein sequence | MKTKVSIAVT AALISSAAIA SSDFSANKYS PELTSVNNYN KPQTSSPSLV APQRFIVELE
SPALAKYRGG IQQLVATAPA KKGQRIDVQS AGAKSYVSHL SQEQNAFTKA LSKSAPNAKV
ERNFKTLFNG VSLVAQGMTL EQIAAMPGVK SVYPETMYET NMDASHEIIN DAAMWEVVSG
MENAGKDIRV AVIDTGIRPE NPMFSGEGFT KPTADMPADD YCSTVDTSFC NDKLIVARWS
QPTFEVCADE HMSPLGYGGH GSHVAGTSVG NKISTTYKDV DVDLSGVAPA AYLMVYKALF
TKTDCSRGSG SNIMLMEAME HAVNDGADVI NNSWGGGAGG DPANSPYKTM YEAAEAAGVV
VVTAAGNDGN GAQTIGCPAC IESGITVANS TTGRFFANSF TMGDDELLAI EANNELLTED
ITLPVIAAVN IDADNFEGCD AFPADSFKDG IALISRGACA FSDKTANAQA AGAKAIVVYN
SKPGAPISMY MPDATLPGVM ISDADGAAVI EGLEEGVACT IGSTVKRIAN STLADLINAS
SSRGPNGNQN ILKPDLAAPG TSILSATSPD EDGTDFTTMT GTSMASPHVA GAAALMSQLH
PDWSANDIKT ALTSTSHMAG ILDDDAETDA NPFAMGAGRM DLDAAAKAVL TFDKPSVASD
SCVGPCTFTR TVYNKSDETT SWSLSAAADS AGISISPTTL ELEAGASATF TVTVDSTFSE
YGSWIFGNVM IKSDEGKQDA HLPLAVMAKE SSDASLISTL TTQADIKASD EFPIKAVVNN
SIFENTVTLT ANAPQGTKLT SEDDVTVSIS GATQHGFDIN EDLGRITWVG KLDLPEMSSI
KDVGGFPSII DLGVLPQPCE SGCDETALTF NSLPSFKYNG VSYDSITMGD NGLAIVGGGS
TSGTWNNKEL PDSANPNNII APFWSDFDLA DTSGTDTGGG DMAIGVFTGG DGTTWLALEW
KDAQLYADES NTKYTFSIWI KTGDEELVLF NYIDVPNMPA NLTIGAENIG GSVGTTFHYN
GQGSSVTNGD GVILQTSTAG SVNIDYKVKS TEFNPGQSDN VSVDEEATLA FNVLDNDMKD
QKIAHVSVTG DGMTAEALRL IDVAPTGALG KAMLVDEPSN GEVTLKEDGT AEYTPEDDFF
GKDSFSYTSE DADGNTGNAT LVNITVNNVN DAPKVSPSGM SSTEGFAVKA SANGSDVDGD
DLTYTWTQVS GTSVEFTNGG ESIGFTAPSG DHELVFSVVA SDGELESEAG TATITVNSVK
EDTSGGSLGW LTMLLLPFAG LRRRKR
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