| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0792 |
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| Symbol | |
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| ID | 5613923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 940004 |
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| End bp | 941482 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931640 |
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| Product | carbohydrate kinase, YjeF-related protein |
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| Protein accession | YP_001472531 |
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| Protein GI | 157373931 |
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| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
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| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
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| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0035803 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTGCCAA ACGGACCGAC TTTTCCTTGT GAAATGTTCT TAAGCTCGCA AGTACGAACC
GCTGAACAAA AGTTTGTCGA TAGTGGAAAC ACAGATTTTT ATCGGCTTGT TGAGTCAGCG
GGGAATGCTG CATTTGAGCA GATTGAGATG GCACAGGATA AATCGCGATC CATTTTGGTT
GTTGTCGGTT ACGGTAACAA TGGTGCCGAT GGTTATGTGT GTGCAAGGAG GCTGTTAGAG
TCGGGCTATA GTGTTGCGTT AATGGCATTT ACTCGAGAGA AAATGGGTGA TGAGGTACTT
AAAGCACAAC GACTTTTCAT CGAGAGTGGT GGAGAGGTGG AGTGTTTTTC TCCGGAAAAG
GTTGCCTCGG CAGATGTGAT CATCGATGGC TTACTCGGTA TTGGTTTTAG TGGCGAGATA
AAAGGTGACT TTAAACTTGC TATCGATAGT ATCAACAGTA GTGATGCATG GGTGCTTAGT
TTAGACATCC CCTCAGGTAT CAACGCAGAT ACTGGAACCG GAATTAATGC CGTAGAGGCC
GATGTGACAC TCACTTTTGG TGCGGTTAAA CAAGGGCTAA TGACTGGTCG TGCAAGACAC
TGTGTTGGGC AGTTGCTGTT TAAGGCTCTG GGGTTAACCG AATATCTGCC ACAGGCTAAC
TCAATCAATG TCTCTATTGA TTATGTTAAT AAGCATATTA AACCTAGAGA CAGAGACTCA
CATAAAGGCT TGTCTGGGAA AGTGTCTGTA ATTGGCGGCG ATGCCGGGAT GGCTGGTGCT
GTTAGATTAG CCGGAGAGGC TTGCCTTAGG GCGGGAGCAG GTTTAGTTAC GGTAATATCC
AGGCCTGAGC ATCAAATTGT CGTAAATTCG AACCGCCCCG AGCTGATGTT TTGGGGATGT
GAGTTAGTCG ATATGGAAGT TTATCTTCGA CTCGGTTGGG CCAATATTTT GGTGATTGGT
CCGGGCCTAG GCAAGCAAGA CTGGGGGTAC AATTTACTCA AGGCTGTAGG CTTGAGTGAT
AAGCCTTGTG TGATGGATGC TGATGCCCTG AATTTACTCA GCGCCGAACA TGGCAGGCAG
GATCATTGGG TTCTGACTCC CCACTCAGGC GAAGCTGCCA GGCTATTAGG CATTTCTACA
CTGGAAGTTG AAAACGACAG GTTTGCGGCC GTTAAAGCCA TACAGCAGAA ATATGGTGGC
GTGGTGGTAT TAAAGGGGCC GGGTACGTTA ATTTATGATG GTTCACAATG TTATGTCGCC
CCTGTGGGTA ACCCCGGACT CGCCAGCGGC GGTTGTGGCG ATGTGTTATC AGGCATTATT
GCTGCGCTGA TGGCGCAGGG GTTCGATAAA CTCTCCTCGG CAATAATGGG AGTGGTGGTA
CATGGAGAAG CCGCCGACCG CGCCGCAATA GATGGAGAAA GGGGGATGCT TGCCAGTGAC
TTAATGCCCC ATATCAGACA GTTGGTAAAC AAAATTTGA
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| Protein sequence | MLPNGPTFPC EMFLSSQVRT AEQKFVDSGN TDFYRLVESA GNAAFEQIEM AQDKSRSILV
VVGYGNNGAD GYVCARRLLE SGYSVALMAF TREKMGDEVL KAQRLFIESG GEVECFSPEK
VASADVIIDG LLGIGFSGEI KGDFKLAIDS INSSDAWVLS LDIPSGINAD TGTGINAVEA
DVTLTFGAVK QGLMTGRARH CVGQLLFKAL GLTEYLPQAN SINVSIDYVN KHIKPRDRDS
HKGLSGKVSV IGGDAGMAGA VRLAGEACLR AGAGLVTVIS RPEHQIVVNS NRPELMFWGC
ELVDMEVYLR LGWANILVIG PGLGKQDWGY NLLKAVGLSD KPCVMDADAL NLLSAEHGRQ
DHWVLTPHSG EAARLLGIST LEVENDRFAA VKAIQQKYGG VVVLKGPGTL IYDGSQCYVA
PVGNPGLASG GCGDVLSGII AALMAQGFDK LSSAIMGVVV HGEAADRAAI DGERGMLASD
LMPHIRQLVN KI
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