| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0788 |
|---|
| Symbol | psd |
|---|
| ID | 5609919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 935010 |
|---|
| End bp | 935873 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931632 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001472527 |
|---|
| Protein GI | 157373927 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.234745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000512313 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGACAAAA TTAAAATTGC ACTGCAATAC ATGATGCCAA AACACTTAAT ATCCCGCCTC
GTAGGTAAAT TGGCGGCAGC AGAACTTGGT AGCATCACCA CTGCTGCAAT TAAGTGGTTT
ATTAAGCAAT ATAAAATTGA CATGAGCGAA GCGGCACAGA GTGAGCCTGA AGCTTATACG
ACCTTTAATA ATTTTTTCAC TCGCGCCCTT AAACCAGGTA TACGTCCCCT GTTTGATGAT
AAAGACTACA TTGTCCACCC GGTGGACGGC GCAATAAGCC AGTGTGGACC AATCAAAGGT
GATCAAATTT TTCAAGCGAA GGGGCATGAA TATTCATCAC TTGCACTGTT AGGCAATCAA
GCCGATGATG CAAAGCGCTT CGAAGATGGT GATTTTGCGA CGATTTACCT GGCACCAAAA
GATTATCACC GGATTCATAT GCCGATTAAG GGTACCTTGT CAAAAATGAC CTATGTACCC
GGAGACCTGT TTTCAGTCAA TCCTCTGACA GCTGAAAATG TACCCGGTTT ATTTGCCAGA
AATGAGCGAG TCGTAGCGCT GTTCGAAACA GAAATTGGCC CTATGGCTAT GGTACTTGTC
GGCGCAACCA TTGTGGCAAG TATTGAAACT GTCTGGGCTG GTACCGTTAC GCCACCGGCA
GGCAAAAAGG TCTTTACCTG GGATTACCCA ACAGAGGGAC CCGACGTGAT CACTCTTGAT
AAAGGTGATG AGATGGGACG CTTCAAGCTT GGAAGCACAG TAGTCATGCT ATTTGCCAAA
GACGCACTGG ATGAATTCGC CAAGGATGTC GTGCCTAAAG CTGTCACTCG AATGGGGCAG
CCATTTGCAA AAATAGAGGA CTAA
|
|---|
| Protein sequence | MDKIKIALQY MMPKHLISRL VGKLAAAELG SITTAAIKWF IKQYKIDMSE AAQSEPEAYT
TFNNFFTRAL KPGIRPLFDD KDYIVHPVDG AISQCGPIKG DQIFQAKGHE YSSLALLGNQ
ADDAKRFEDG DFATIYLAPK DYHRIHMPIK GTLSKMTYVP GDLFSVNPLT AENVPGLFAR
NERVVALFET EIGPMAMVLV GATIVASIET VWAGTVTPPA GKKVFTWDYP TEGPDVITLD
KGDEMGRFKL GSTVVMLFAK DALDEFAKDV VPKAVTRMGQ PFAKIED
|
|---|
| |