| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0774 |
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| Symbol | tolC |
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| ID | 5614047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 917989 |
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| End bp | 919314 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931618 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001472513 |
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| Protein GI | 157373913 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000983275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000104798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAATTCA AGATCCGAAC GATATGTGCA GCTTTAACGC TTGCAGCCAC AACGTCAGCC
GTACAGGCCG ATGATTTATT GCAGATTTAC GAACAAGCGC TTACAAGTGA TCCTATCGCC
TTACAGGCAA AGGCTCAGCG AGATGCCCTG TACGAACAGA TTGAAGAAAA CCGTGCGCCG
TTACTTCCTA CCATCAGCGC AAGCGTAGGT TATGGTAAAA GTTGGACTAA TGTTTCAGAA
AGCGAATATA ACAGCGGCCT GAATGCCGGT GTCACCCTGA ACCAGGTGAT TTACGACCAC
AGCGCATGGG TAGGACTAAG CTTAGCCGAG CTTGCGGCTT CTCAGGCCGA TGCCGCTTAT
GCCTCGGAAC TGCAAAAGCT AATCATCCGA GTATCCGGTG CCTATTTCGA CGTTTTATCG
GCTAAAGATA ACTTCGAATT TAAAGGTTCT GAGAAACGTG CTATCGAACG TCAGCTAGAG
CAGACGAAGC AAAGATTTGC CGTAGGTCTG ACTGCCATTA CCGATGTACA CGAAGCTCAG
GCTCAGTTTG ACTTGGCTCG CGCCTCTGAA ATTTTATCAG AAAACCAGTT GATCAACAGC
TACGAAGCAT TGCGTGAAAT TACAGGTATC GATCATAAGT CTATCAATAT CTTAGATACC
ACTCGTTTCA CCGCGGTCAC CCCAGCTCCA GCACAACCTA ACGACTGGTT GAAAATGGCT
GAGACAAACA GTGTCGACCT GATGACCAGA CGTATCGGTA AAGATATCGC TCAAGAGACC
ATCAGCCTCT ATAAAGCGGG TCACATGCCT TCGCTAAGTT TAAATGCGGG CTATACGACT
AACCTTGAGC AGAAAGACGA GCTTAAAGAT AAAAGCGATT TTGATAATGC CAATGTCGCT
TTGACATTGA GCGTACCGAT CTTTGAAGGC TTTAAAGTCA CATCAAAAGT CAATCAAGCT
CAGTATCAGT TTGTTGATGC GAGTGAAAAG CTTGAACAGA CCTACCGTAA GGTCGTTAAA
GATGTCCGCA ACAACTTTAA CAACGTAGGC GCTTCAATCA GCTCGATTAA AGCTTACGAG
CAGTCGGTAC TCTCTTCAGA GAGCGCCTTG AAGGCGACTC AAGCAGGTTT CGAGGTCGGT
ACCCGTACTA TTGTTGATGT ACTAAACCGA ACGCGTGATC TCTATGATTC TAAGCGTCAG
TTATCTGATG CGCGTTACGG TTATATCAAC TCGATTCTGG CACTTAAGCA AGCCGCCGGA
ACCTTGAATG AAGATGACGT CATCGCGATC AACAACGGCC TGACAGCACA AGCTGTAACG
CCATAA
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| Protein sequence | MKFKIRTICA ALTLAATTSA VQADDLLQIY EQALTSDPIA LQAKAQRDAL YEQIEENRAP
LLPTISASVG YGKSWTNVSE SEYNSGLNAG VTLNQVIYDH SAWVGLSLAE LAASQADAAY
ASELQKLIIR VSGAYFDVLS AKDNFEFKGS EKRAIERQLE QTKQRFAVGL TAITDVHEAQ
AQFDLARASE ILSENQLINS YEALREITGI DHKSINILDT TRFTAVTPAP AQPNDWLKMA
ETNSVDLMTR RIGKDIAQET ISLYKAGHMP SLSLNAGYTT NLEQKDELKD KSDFDNANVA
LTLSVPIFEG FKVTSKVNQA QYQFVDASEK LEQTYRKVVK DVRNNFNNVG ASISSIKAYE
QSVLSSESAL KATQAGFEVG TRTIVDVLNR TRDLYDSKRQ LSDARYGYIN SILALKQAAG
TLNEDDVIAI NNGLTAQAVT P
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