Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0764 |
Symbol | |
ID | 5611019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 909917 |
End bp | 911269 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931608 |
Product | hypothetical protein |
Protein accession | YP_001472503 |
Protein GI | 157373903 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.798576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000101633 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | TTGAAGATTA AAGTTTTATG TATCAATGCA CTGTTATTCT GCAGTGCACT CAGTTTGCCC TATGCCTTGG CCGATGAGGC TCAGGAAACT CAAGTAACTC AAGCGACTCA AACAAAGAAT GCCAATGCTA ACGGTACGCC ACAAGTGCAT CAAACCGGGA TAAACAGGAG TAAAGATTAC TCCCCCGAGT TTGTCGCCGT GCCATTTGTT TTCTCTACAG AAACCCTGAG TACTACTGTG GGAGGGGCTG GCGTCATTAA GCATGCCGGT CAGCCACAGG CCTCTGCGTT TGGTATTGGT CTCTACAGTA GTAATGAAAG TTGGATCACC TATTTAGGGC TCAACAACTA TCAACTACCC AAGCTGGATC AATGGCTGTT TTCCGGCGAG TTTAGTCGAG CCAGTTATAA AGAGGGGATC TACTTTGTTC CTGAAGATGC GAATAGATCG AGCAAAGGTG TTAACCGCTC AGATGCGATG GCAACCAATC GGGTTATAAC GGTTGGAGAC GAGTTTTACG CCAAGCTACA CATTAAATAT GTGCTGCCCT GGGGAAAGGG AGCGAAAGGC GCCGCGAGAA GCTTAATGCC CTCGCTAATA ACGGATCCTC TGAGTTGGGA TCCAAGAGAG TCAGGTGTTA CCAGCTTACA GCTCACCCCC TTTATTCAAA CTCAGGAACT CCTGGGATAT GAAGATCTGC CGACTGAAAC TCAGGGGTTA AAATTTAAGT TTGACTGGGA CAATCGGGAT AATGGAAAAA ATAGTACCCG AGGAGGCCGC ACAAGTCTGA CGGTCAGCCG AGATTTTGGT GCGAGAGAGG GGGGAGCCGA TGATAGAGAA AGTTGGACTA TGTGGGAGTT TGAACAGAGC GCCTTCCTGT CAATGGGGGA GAGTGACTGG TTCGGTCAGC AAATATTAGC CTTCAATTTT TACCTTGCCG ATACACCAAC CTGGAACGAC TATGACTCAA GCACGCAAGC GTATCAGCGA CCTCCATCTT TTGCCGGCGT GACATTGGGT GGTTTCGATC ATCTGAGAGG CTACTCCAGC AAGCAATTCT ATGGTCGTAG TGCACTGCTT TACTCTGCAG AGTATCGAGT TCAACCCCGC TGGCAGCCTT TACAGAGTTT ACCCGTATTT AATCTCTATG ATGTACCTTG GTGGCAATGG GTCGTTTTTG CTGAAGCCGG CCAGGTTGCA GATGATTTCA GTGCCAGTGA ACTACATGAT GATATGAAAT GGACGCTAGG TGTTGGTGCA AGGTTTGAAG TTGAAAACGT TATCGTAAGA ACCGAGTTTG CTTATGCCGA AGACGCGAAG CAATTTTGGA TAATGGTTAA TCAGCCTTTT TAA
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Protein sequence | MKIKVLCINA LLFCSALSLP YALADEAQET QVTQATQTKN ANANGTPQVH QTGINRSKDY SPEFVAVPFV FSTETLSTTV GGAGVIKHAG QPQASAFGIG LYSSNESWIT YLGLNNYQLP KLDQWLFSGE FSRASYKEGI YFVPEDANRS SKGVNRSDAM ATNRVITVGD EFYAKLHIKY VLPWGKGAKG AARSLMPSLI TDPLSWDPRE SGVTSLQLTP FIQTQELLGY EDLPTETQGL KFKFDWDNRD NGKNSTRGGR TSLTVSRDFG AREGGADDRE SWTMWEFEQS AFLSMGESDW FGQQILAFNF YLADTPTWND YDSSTQAYQR PPSFAGVTLG GFDHLRGYSS KQFYGRSALL YSAEYRVQPR WQPLQSLPVF NLYDVPWWQW VVFAEAGQVA DDFSASELHD DMKWTLGVGA RFEVENVIVR TEFAYAEDAK QFWIMVNQPF
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