Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0753 |
Symbol | |
ID | 5611052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 897159 |
End bp | 897899 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931597 |
Product | 23S rRNA (guanosine-2'-O-)-methyltransferase |
Protein accession | YP_001472492 |
Protein GI | 157373892 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0566] rRNA methylases |
TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0205206 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000134961 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAAC AAGATTTCAC CTTCGGAATT CACGCCGTAG AAGCGGTACT AAAGCACAGT CCAGAACGAG TGATCGAAAT GTGGGTGCAG GCTGGCCGCG ATGATCAAAG ATTAGCTACG CTACTGCAGA TGGCTGCTGA ATACGGTGTT TCAGTGCAAA CATCTGCGCG AAAAGTTCTT GATGAAAAGT CTGATAATGG ACAACACCAA GGTGTACTAG CCCGCGTAAA AGCCGTAAAG CAGCTCAATG ATAATGATCT GTTAGCACTG GTAGAGAAGA CTGAAACCCC TTTCTTCCTA ATCTTAGACG GTGTTACCGA TCCGCATAAT CTGGGTGCCT GTCTGCGTAA TGCCGATGCC GCCGGAGTAC ACGGCGTTAT TGTTCCTCGT GATAACTCTG TAGGCTTAAC GCCAACAGTG AGCAAAGTGG CATGTGGTGC GGCAGAAGTT GTGCCTCTGT TTCAGGTGAC CAATCTAGCG CGCACCATGA AGAGCCTGCA AGATAAAGGC GTGTGGATTG TTGGCGCAGC GGGAGAAGCC GATAGCGACC TATACAAGAC AGATCTTAAA GGTTCTCTTG CTATCGCCAT GGGCGCCGAA GATAAAGGTC TGCGTCGTCT GACTCGTGAG AGTTGCGATT CGATTGCATC GATACCTATG TCTGGGTCTG TCTCGAGCCT GAATGTCTCG GTTGCCAGCG GGATCTGTTT GTTTGAGGCT GTACGCCAGA GATTAGGTTA A
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Protein sequence | MKKQDFTFGI HAVEAVLKHS PERVIEMWVQ AGRDDQRLAT LLQMAAEYGV SVQTSARKVL DEKSDNGQHQ GVLARVKAVK QLNDNDLLAL VEKTETPFFL ILDGVTDPHN LGACLRNADA AGVHGVIVPR DNSVGLTPTV SKVACGAAEV VPLFQVTNLA RTMKSLQDKG VWIVGAAGEA DSDLYKTDLK GSLAIAMGAE DKGLRRLTRE SCDSIASIPM SGSVSSLNVS VASGICLFEA VRQRLG
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