| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0734 |
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| Symbol | |
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| ID | 5610999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 877768 |
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| End bp | 878550 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931578 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472473 |
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| Protein GI | 157373873 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
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| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.336602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATGA CTAATCAACT GGCGAGTCTT GGACGACTGA CCATAGATTT TGTTGTCGGT
CTCGGGCGTG CAGGTGTAAT GCTGTGGGGA GCGATAGCAC GTAAACCCAG AATCAAAGGC
TTCCCATTAT TTGTTAAGCA GTTATATGTC GTCGGTGTGC AATCGATGGT GTTGATTTTT
GTTTCGGGAC TCTTTATCGG CATGGTGTTA GCCCTTCAGG GCTATAACAT CTTAGTTGGT
TTTGGTACCG AAGAGAGTTT GGGCCCAATG GTGGCCTTGA GTCTTCTGCG AGAGTTAGGT
CCAGTCGTAA CGGCGCTGTT ATTTGCAGGC CGGGCAGGAT CGGCACTCAC TGCAGAAATT
GGTTTGATGA AGAGTACCGA ACAGCTGTCG AGTCTGGAGA TGATGGCTAT CGACCCTCTG
AGACAGATTA TTGCACCCAG ATTTTGGGCC GGAGTGGTGA GTCTGCCTCT GTTAGCTCTG
ATATTTACCG CCGTGGGGAT CTATGGCGGA CATGTGGTGG GAGTAGAATG GAAAGGGATT
GACAGTGGGA GTTTCTGGTC GATTCTTCAG GCATCTGTCG AGTGGCGAGA AGACATAGTT
AATTGCATCA TTAAGAGTTT GGTATTTGCT GTGGTTGTGA CTTGGATAGC TCTGTATCGA
GGCTACCGGG TTATCCCTAA CCCGGAGGGG ATAAGCAAGG CAACAACGCA AACGGTTGTT
CAGTCTAGTT TGGCCGTATT GGCGCTGGAC TTCTTGCTTA CCGCGGTGAT GTTTGGTCGT
TAA
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| Protein sequence | MNMTNQLASL GRLTIDFVVG LGRAGVMLWG AIARKPRIKG FPLFVKQLYV VGVQSMVLIF
VSGLFIGMVL ALQGYNILVG FGTEESLGPM VALSLLRELG PVVTALLFAG RAGSALTAEI
GLMKSTEQLS SLEMMAIDPL RQIIAPRFWA GVVSLPLLAL IFTAVGIYGG HVVGVEWKGI
DSGSFWSILQ ASVEWREDIV NCIIKSLVFA VVVTWIALYR GYRVIPNPEG ISKATTQTVV
QSSLAVLALD FLLTAVMFGR
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