| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0731 |
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| Symbol | |
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| ID | 5611674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 874646 |
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| End bp | 875623 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931575 |
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| Product | arabinose-5-phosphate isomerase |
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| Protein accession | YP_001472470 |
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| Protein GI | 157373870 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
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| COG ID | [COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | [TIGR00393] KpsF/GutQ family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.338058 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAGATG AAACTCAATT ACGCCAATGG GGCAGAAATG TTATCGATAT CGAAAGAAAT
GCTCTCGATA ATCTATACCA ATATGTAGAT TCTGCAGAGT TTGCCACGGC GTGTCGGTTA
ATCCTCGAAT GTACCGGTAA GGTCATCGTC ATGGGGATGG GCAAATCCGG ACATATAGGT
AATAAGATTT CGGCAACCTT AGCCAGTACT GGCACCCCCG CATTCTTCGT GCACCCCGGT
GAAGCCAGCC ATGGCGATCT TGGCGTTCTG AGTGAAAATG ATATCATCTT AGCTATCTCC
AACTCAGGTG AAGCCAGTGA AATTCTCACC TTGATGCCGG TGATCAAGCG AATGGGACTT
CCAATCATCG CCGTTACGGG TAAGCCCGAA TCGAATATGG CAAAGCTGTC TATCGTACAC
CTGTGTATCG AAGTACCGGA AGAGGCTTGT CCTCTGGGGC TTGCGCCGAC CTCCAGCACG
ACTGCCACAT TAGTTATGGG GGATGCTCTA GCCGTCGCAC TGCTACAGGC CAGAGGGTTT
ACCAAGGATG ATTTTGCCTT GTCACACCCA GGCGGTAGCT TAGGCCGAAA ATTACTGCTA
AAAGTCAGCG ATGTTATGCA TAAAGCTTCC GAGCTCCCTC TGGTCAGCCA TAATATCTGT
ATCACAGATG CGCTATATGA GATCTCAAAG AAAGGGCTGG GAATGACAGC CGTCGTCGAT
GATGATAATA AACTCGTCGG TATCTTTACC GATGGCGATC TGCGCAGGGT TATCGACGCA
GAAGTCAATC TGAGAAAGAC CTCGATAAGT GATGCCATGA GCAGAGGCTG CGTGACAGTT
TCCGATGATA TTTTGGCAGC CGAAGCATTG AAAGTGATGG AAGAGAAAGA CATTAACGGC
CTGATTGTCA TCGATGAACA GCAACAGCCA ATCGGTGCAT TGAACATGCT GGATATGGTA
AAAGCGGGAG TGATCTAG
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| Protein sequence | MVDETQLRQW GRNVIDIERN ALDNLYQYVD SAEFATACRL ILECTGKVIV MGMGKSGHIG
NKISATLAST GTPAFFVHPG EASHGDLGVL SENDIILAIS NSGEASEILT LMPVIKRMGL
PIIAVTGKPE SNMAKLSIVH LCIEVPEEAC PLGLAPTSST TATLVMGDAL AVALLQARGF
TKDDFALSHP GGSLGRKLLL KVSDVMHKAS ELPLVSHNIC ITDALYEISK KGLGMTAVVD
DDNKLVGIFT DGDLRRVIDA EVNLRKTSIS DAMSRGCVTV SDDILAAEAL KVMEEKDING
LIVIDEQQQP IGALNMLDMV KAGVI
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