| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0726 |
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| Symbol | |
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| ID | 5611802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 870451 |
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| End bp | 871944 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931570 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001472465 |
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| Protein GI | 157373865 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.157671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAAATGGGT CAGCAGTTAA CCATGACACC ACAGCTGCAA
CAGGCAATAC GCCTTTTGCA GCTTTCGTCG CTGGAACTGC AACAAGAGAT CCAACAAGCA
TTAGACTCCA ACCCACTACT TGAGTTGGAT GAAGAGCAAG TCGATGCAGA GCCCGTCAAT
AGTGATAGTA AAGCCAGTGA TGAGCCTGAA TATAGCGCCT CAGCAGAAGG TGATACAGAT
AACGAAGGCC CACAAGATAG CTCAGCCGTC GAGACATCCG ATGCACTGAC CCAAGATTCC
ATGCCAGAAG ATCTTCCCAT GGATACCACG TGGGACGAGG TCTATACTGC GACCCCAAAC
TCCAGTTCCG GGGCAATGCG CGACGACGAT ATGCCCTTTC AAGGTGAAAC CAGCGAAGGC
TTATATGAAC ACCTTGAATG GCAAAAAAAC CTCACCCCTT TCTCCGATAA TGATCTAGCC
ATCGCCACCG CCATTATCGA CGCCATCGAC GAACGCGGTT ACCTGACTCA AAGTGTCGAC
GATATTCTCG AGGCAATGGG CGACCCTGAA ATTGAACAGG ATGAAGTTGA AGCCGTACTC
AAGCGTGTTC AGCATTTCGA TCCTATCGGT ATTGCGGCAA GAGATCTCAG TGAATGCCTC
TCGATTCAGC TCGCCCAATA TGCCGACACG ACTCCTCATA TCGGCAATGC CAAACTCTTG
ATCAAAGAAC ATTTAGACCT TATTGCCGGA CGTGATTTCC GTCTGCTAAT GCGCAAGACT
AAATTGAAAG AAGATGATCT CAGAGAGGCG ATTGCACTGA TCCAGACGCT GAACCCAAGA
CCGGGACTGG CCATTACTCC TGGGCGAGAT GAGTATGTGA TCCCGGACGT CACCGTGACC
AAAAAGAAAG GTCGCTGGGT CGTGGAGTTA AACCCGGATT ATATGCCTAA GATTAATGTC
AATCAGCACT ATGCCTCCAT GGCCAGAAGC ACAAAGAATC AAGCCGATGG GCAATATATC
CGAGGTCACC TGCAAGAAGC CAAGTGGTTT ATTAAGAGCC TGGAAAGTCG TAATGAGACC
CTGCTGAAAG TCTCTAACTG CATAGTGAAA TTTCAACAAG GTTTCTTCGA GTTCGGTGAA
GAAGCGATGA AGCCTATGGT GCTGAACGAC ATCGCCGAAG CGGTTGAAAT GCATGAATCG
ACCATTTCAC GTGTCACAAC ACAGAAGTAT ATGCACACCC CCAGAGGGAT ATTTGAATTG
AAGTACTTCT TCTCCAGTCA TGTCGGTACG GATGATGGTG GAGAATGTTC ATCGACTGCG
ATACGCGCTT TCATTAAGAA GTTGATCGCA GCCGAAAACC AGAAGAAACC CCTGAGCGAC
AGCAAAATGG CGACGCTACT GGGGGAACAG GGGATCAAAG TGGCGAGGCG AACGATTGCC
AAATATCGTG AAGCTCTGCT CATCCCCCCA TCGAATCAGC GTAAGAGTTT ATAA
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| Protein sequence | MKASLQLKMG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELD EEQVDAEPVN
SDSKASDEPE YSASAEGDTD NEGPQDSSAV ETSDALTQDS MPEDLPMDTT WDEVYTATPN
SSSGAMRDDD MPFQGETSEG LYEHLEWQKN LTPFSDNDLA IATAIIDAID ERGYLTQSVD
DILEAMGDPE IEQDEVEAVL KRVQHFDPIG IAARDLSECL SIQLAQYADT TPHIGNAKLL
IKEHLDLIAG RDFRLLMRKT KLKEDDLREA IALIQTLNPR PGLAITPGRD EYVIPDVTVT
KKKGRWVVEL NPDYMPKINV NQHYASMARS TKNQADGQYI RGHLQEAKWF IKSLESRNET
LLKVSNCIVK FQQGFFEFGE EAMKPMVLND IAEAVEMHES TISRVTTQKY MHTPRGIFEL
KYFFSSHVGT DDGGECSSTA IRAFIKKLIA AENQKKPLSD SKMATLLGEQ GIKVARRTIA
KYREALLIPP SNQRKSL
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