| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0716 |
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| Symbol | |
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| ID | 5611877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 862607 |
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| End bp | 863287 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931560 |
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| Product | OmpA/MotB domain-containing protein |
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| Protein accession | YP_001472455 |
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| Protein GI | 157373855 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.12728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTTATTT CTAAAAATTC TTTTGTTGTG AAGGCTGTTT TGGGGTGTTC ATTAATCGTA
TTAGCCGGTT GTCAAACGAC TAACCCTTAT AGCAACGAGA GTCAAAATGC CAAGGCGACC
AATGGTGCGC TTATCGGTGC TATTGCCGGT GCTGCGATTG GCGTTGCTTC ATCGAGCCGT
AGCGATCGTG GTAAGGGAGC GTTAATTGGC GCCGCATCGG GTGCTGCACT GGGTGGTGGT
ATCGGTTATT ACATGGATAC TCAGGAGGCT GAATTAAGAA AGCAGCTTCA ATCGACCGGT
GTCAGTGTGA CTCGCAGTGG CGATAATATT GTATTGAATA TGCCAAACGA AGTGACCTTT
GGTGTGGATC AGACCGATCT GAGTTCAGGT GCTAAAAGAG TACTTAACAG TGTCGCTTTG
GTTGCTAAAG AATACGATCA AACTCAGTTG AATGTGCTTG GTTATACCGA CAGTTCAGGG
GCCGAATCAT ACAACTTAAG GCTATCGAAA ATTCGTGCTA TCGAAGTGGG TAACTACTTA
GTCGCTCAGA AGATCGAATA TGGCAGAGTG AAATCAGAAG GTCTCGGCGA GTCAAGACCC
ATTGCGACTA ATGCAACGGC TGAAGGCCGA GCGCAAAACC GCAGAGTTGA AATCGTGTTA
AGCCCGCTAC CACAGGGCTG A
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| Protein sequence | MLISKNSFVV KAVLGCSLIV LAGCQTTNPY SNESQNAKAT NGALIGAIAG AAIGVASSSR
SDRGKGALIG AASGAALGGG IGYYMDTQEA ELRKQLQSTG VSVTRSGDNI VLNMPNEVTF
GVDQTDLSSG AKRVLNSVAL VAKEYDQTQL NVLGYTDSSG AESYNLRLSK IRAIEVGNYL
VAQKIEYGRV KSEGLGESRP IATNATAEGR AQNRRVEIVL SPLPQG
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