Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0694 |
Symbol | |
ID | 5612409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 836576 |
End bp | 838330 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931538 |
Product | fumarate reductase, flavoprotein subunit precursor |
Protein accession | YP_001472433 |
Protein GI | 157373833 |
COG category | [C] Energy production and conversion [S] Function unknown |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [COG3976] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATTAAAA AGACAATTAT TGCCAGTGCA ATTGTGGCAC TGGTCATGGG CTGCTCAGTA AAAGAGGCTG ACCAGCTAAC GAAGAGCGAA GGCTCTGCAT TCGGTAAACA TGGAGAGATC CAGGTACAGA CCGAGACTAA AAATGGTCAG CTGGTGGATA TCAGCGTCCT GAAACAGAAT GAAAATAAGG TGTTGGCGGC GTCGGTATTT ACCGAGATGA AAGATGCGAT GATAGCCAAT AACAGCACCC AAGTCGATGG TATCAGTGGT GCGACAATCA CCAGTGGGGC ATTTAAAGAG GCTGTCGAGA GCTCTCTTGC TGCCGCCGGC GTCACCTTAG TTGCCGGTAT GGCCAAGAGC AATGATAAGT CGAAGGATCT GATTGCCAGT GAACAGAACT TCGACGTGGT TATCATAGGT TCTGGCGGTG CAGGTTTCAG CGCCGCTATT ACGGCTAAAA ATGCCGGTGC TAACGTCGTG ATCATCGAGA AGATGCCGAC AGTCGGTGGT AACAGCTTGA TCACCGGTGG CCAGATGAAC GTGCCGGGTA ACTGGGTTCA GAAGAAGATG GGCATCGAAG ACAGCATCGA TCTGTTTGTT AAAGATACCC TTAAGGGCGG CGACTATCTG GGCGATCCTG AGATGGTGCA GATTCTGGCC GAGCAGGCAC TGCCTGCCGC AGAGTGGTTA AGGGACTATA TCAAGGTTGA TTTTTACAAA GATCAGCTAT TCCAATTTGG TGGTCACAGC GTTAAGCGTG CCCTGATCCC CCGTAACCAT ACCGGCGCCG AGTGGATCAG CAAGTTTATG GCAAAAACCG ATGAGCTGCA GATCCCAATT CACACCCGCA CGACCGCAAC GGCTTTGATT AAAGATCAGA GCGGACGCGT GATCGGTGTA GAAGCCGAGA AGAATGGGCA GCAGATCACC TATTACGCCA AGCGTGGCGT TATCATGGCC ACCGGTGGTT TCGGTGCTAA CGTGGCTATG CGTACCAAGT ATGTCCCTGA GCTGGATAAC CGCTACGGTA CAACCAACGC ACGCGGCATC ATGGGCGATG GTATCGTGAT GGCCGAGAAG CTTAACGCCA AGACTCATAA CATGGAGTCT ATTCAGACCT ACCCTATCTG TCATATCGAT ACCGGTGTGA TCTCTTTGAT TGCCGATTCT CGCTTCTTCG GCGCAATCGT TGTCAACAAA GAAGGGCATC GTTTCGTTGA AGAGCTGGAA CGTCGTGACG TGATCAGCCG TGCAATTCTG GCTCAGACAA ATCAGCAGGC TTATGTGCTT TGGGGTGGTG AGATTGAAGA TATCGCCGGT GTAGTCGGTG TCCATAAGGA TGAGTTCGGT GAGCTTAACC GTAAAGGCAT GATGTTTAAG GCTGACTCAA TCGAAGAGCT GGCTGGTAAG TTTGGTATCG ATGAAAAGGC ACTGATGGCT CAGGTTGGAC GTGTCAATCA GTTTGCTAAA GCGGGTGATG ATAAAGAGTT TAATCATCGT GGTGGACTGA AGACTATTAT GAAGCCTCCT TTCTATATGC TGGTAGCTAA GCCATCAGTT CATCACACTA TGGGTGGCTT GATGACAGAT ACCCATACCC GTGTACTGGA TACCCAAGGT AAGGTTATTG CCGGTCTGTT TGCGGCCGGT GAAGTTACCG GTATGACTCA TGGCTCTAAC CGCCTGGGTG GTAACGCCAT TACCGATATT ACCGTGTTTG GTCGTATTGC TGGTAAAGAA GCTGCCGCAA AATAA
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Protein sequence | MIKKTIIASA IVALVMGCSV KEADQLTKSE GSAFGKHGEI QVQTETKNGQ LVDISVLKQN ENKVLAASVF TEMKDAMIAN NSTQVDGISG ATITSGAFKE AVESSLAAAG VTLVAGMAKS NDKSKDLIAS EQNFDVVIIG SGGAGFSAAI TAKNAGANVV IIEKMPTVGG NSLITGGQMN VPGNWVQKKM GIEDSIDLFV KDTLKGGDYL GDPEMVQILA EQALPAAEWL RDYIKVDFYK DQLFQFGGHS VKRALIPRNH TGAEWISKFM AKTDELQIPI HTRTTATALI KDQSGRVIGV EAEKNGQQIT YYAKRGVIMA TGGFGANVAM RTKYVPELDN RYGTTNARGI MGDGIVMAEK LNAKTHNMES IQTYPICHID TGVISLIADS RFFGAIVVNK EGHRFVEELE RRDVISRAIL AQTNQQAYVL WGGEIEDIAG VVGVHKDEFG ELNRKGMMFK ADSIEELAGK FGIDEKALMA QVGRVNQFAK AGDDKEFNHR GGLKTIMKPP FYMLVAKPSV HHTMGGLMTD THTRVLDTQG KVIAGLFAAG EVTGMTHGSN RLGGNAITDI TVFGRIAGKE AAAK
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