Gene Ssed_0694 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0694 
Symbol 
ID5612409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp836576 
End bp838330 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content50% 
IMG OID640931538 
Productfumarate reductase, flavoprotein subunit precursor 
Protein accessionYP_001472433 
Protein GI157373833 
COG category[C] Energy production and conversion
[S] Function unknown 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
[COG3976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01813] flavocytochrome c 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTAAAA AGACAATTAT TGCCAGTGCA ATTGTGGCAC TGGTCATGGG CTGCTCAGTA 
AAAGAGGCTG ACCAGCTAAC GAAGAGCGAA GGCTCTGCAT TCGGTAAACA TGGAGAGATC
CAGGTACAGA CCGAGACTAA AAATGGTCAG CTGGTGGATA TCAGCGTCCT GAAACAGAAT
GAAAATAAGG TGTTGGCGGC GTCGGTATTT ACCGAGATGA AAGATGCGAT GATAGCCAAT
AACAGCACCC AAGTCGATGG TATCAGTGGT GCGACAATCA CCAGTGGGGC ATTTAAAGAG
GCTGTCGAGA GCTCTCTTGC TGCCGCCGGC GTCACCTTAG TTGCCGGTAT GGCCAAGAGC
AATGATAAGT CGAAGGATCT GATTGCCAGT GAACAGAACT TCGACGTGGT TATCATAGGT
TCTGGCGGTG CAGGTTTCAG CGCCGCTATT ACGGCTAAAA ATGCCGGTGC TAACGTCGTG
ATCATCGAGA AGATGCCGAC AGTCGGTGGT AACAGCTTGA TCACCGGTGG CCAGATGAAC
GTGCCGGGTA ACTGGGTTCA GAAGAAGATG GGCATCGAAG ACAGCATCGA TCTGTTTGTT
AAAGATACCC TTAAGGGCGG CGACTATCTG GGCGATCCTG AGATGGTGCA GATTCTGGCC
GAGCAGGCAC TGCCTGCCGC AGAGTGGTTA AGGGACTATA TCAAGGTTGA TTTTTACAAA
GATCAGCTAT TCCAATTTGG TGGTCACAGC GTTAAGCGTG CCCTGATCCC CCGTAACCAT
ACCGGCGCCG AGTGGATCAG CAAGTTTATG GCAAAAACCG ATGAGCTGCA GATCCCAATT
CACACCCGCA CGACCGCAAC GGCTTTGATT AAAGATCAGA GCGGACGCGT GATCGGTGTA
GAAGCCGAGA AGAATGGGCA GCAGATCACC TATTACGCCA AGCGTGGCGT TATCATGGCC
ACCGGTGGTT TCGGTGCTAA CGTGGCTATG CGTACCAAGT ATGTCCCTGA GCTGGATAAC
CGCTACGGTA CAACCAACGC ACGCGGCATC ATGGGCGATG GTATCGTGAT GGCCGAGAAG
CTTAACGCCA AGACTCATAA CATGGAGTCT ATTCAGACCT ACCCTATCTG TCATATCGAT
ACCGGTGTGA TCTCTTTGAT TGCCGATTCT CGCTTCTTCG GCGCAATCGT TGTCAACAAA
GAAGGGCATC GTTTCGTTGA AGAGCTGGAA CGTCGTGACG TGATCAGCCG TGCAATTCTG
GCTCAGACAA ATCAGCAGGC TTATGTGCTT TGGGGTGGTG AGATTGAAGA TATCGCCGGT
GTAGTCGGTG TCCATAAGGA TGAGTTCGGT GAGCTTAACC GTAAAGGCAT GATGTTTAAG
GCTGACTCAA TCGAAGAGCT GGCTGGTAAG TTTGGTATCG ATGAAAAGGC ACTGATGGCT
CAGGTTGGAC GTGTCAATCA GTTTGCTAAA GCGGGTGATG ATAAAGAGTT TAATCATCGT
GGTGGACTGA AGACTATTAT GAAGCCTCCT TTCTATATGC TGGTAGCTAA GCCATCAGTT
CATCACACTA TGGGTGGCTT GATGACAGAT ACCCATACCC GTGTACTGGA TACCCAAGGT
AAGGTTATTG CCGGTCTGTT TGCGGCCGGT GAAGTTACCG GTATGACTCA TGGCTCTAAC
CGCCTGGGTG GTAACGCCAT TACCGATATT ACCGTGTTTG GTCGTATTGC TGGTAAAGAA
GCTGCCGCAA AATAA
 
Protein sequence
MIKKTIIASA IVALVMGCSV KEADQLTKSE GSAFGKHGEI QVQTETKNGQ LVDISVLKQN 
ENKVLAASVF TEMKDAMIAN NSTQVDGISG ATITSGAFKE AVESSLAAAG VTLVAGMAKS
NDKSKDLIAS EQNFDVVIIG SGGAGFSAAI TAKNAGANVV IIEKMPTVGG NSLITGGQMN
VPGNWVQKKM GIEDSIDLFV KDTLKGGDYL GDPEMVQILA EQALPAAEWL RDYIKVDFYK
DQLFQFGGHS VKRALIPRNH TGAEWISKFM AKTDELQIPI HTRTTATALI KDQSGRVIGV
EAEKNGQQIT YYAKRGVIMA TGGFGANVAM RTKYVPELDN RYGTTNARGI MGDGIVMAEK
LNAKTHNMES IQTYPICHID TGVISLIADS RFFGAIVVNK EGHRFVEELE RRDVISRAIL
AQTNQQAYVL WGGEIEDIAG VVGVHKDEFG ELNRKGMMFK ADSIEELAGK FGIDEKALMA
QVGRVNQFAK AGDDKEFNHR GGLKTIMKPP FYMLVAKPSV HHTMGGLMTD THTRVLDTQG
KVIAGLFAAG EVTGMTHGSN RLGGNAITDI TVFGRIAGKE AAAK