| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0668 |
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| Symbol | |
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| ID | 5612939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 809009 |
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| End bp | 810172 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931512 |
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| Product | MFS transporter |
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| Protein accession | YP_001472407 |
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| Protein GI | 157373807 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACAG AAAAAATGCC GCTTCAGGTA TGGATTTTAA CGCTTGCAGC ATTTGCGATT
GGCACCGCAG AATTTGTGAT TGCAGGCATT CTTCCCCAAG TTGCCACATC CCTGTCCATT
TCAGAAGGTC AGGCAGGTTA CTTAATTAGC GCCTACGCGC TGGCGATTGT GTTTGGTGGC
CCAATACTCA CAATTTACCT GGCTCGGTTT AACAAAAAAG CGGTACTGAT AGGCTTAATG
GTACTCTTCA TTATTGGCAA TTTACTTTCC GCTTTTGCGC CTAACTATAC CTCGTTATTC
ATCAGCCGAG TGATCACAGG CTTAGTCCAA GGCCCCTTCT ATGGTATTGG CGCCGTCGTC
GCTACTAACT TAGTCTCTAA GAAAATGGCC GGGCGCGCCG TCGGACAAAT GTTTGCAGGC
CTCACCTTGG CCAATGTATT GGGTGTACCC GGAGGCACTT GGATTGGGTT GCAGTTTGGC
TGGCATACCA CGTTTTTAAC CGTTGCAGGT CTTGGTATTG TGGCATTGCT GTTCATACTC
GCCGTACTCA AATCCGCAGG TCACGGTGAA GCCAAGAATA TTAAAACTCA GCTAATGGCG
TTCAAAAACC CTATGCTAAT TGCAAGTTTA GCCATTACCG TATTTGCCTG GTCTGGTTTT
ATGACACTCT ATGGCTACCT GGCACCAATT GCTATGCACA TTACTGGTTT TGCTGAGCAC
GATGTCACTT GGATTCTGGT CATCGTCGGT ATGGGGCTCA TCATAGGTAA TACTCTTGGT
GGTCGCTCAT CAGATAAAAA CCTACAAAAA GCTTCAATGT TTTGGACGCT GGCAATGATA
GTGACACTGC TATTAGTCGG CTTCACCGTT GAAAATAAAC TGCTGTTCAT CGCCAGCGCA
TTCCTGTTCG GTATTGCATC ATTTGCCAAT GTGCCAGCCA TGCAATTACG GGTGATGAAC
CACGGTGGAG AGGCACAAGA ACTCGCGGCA ACAGCCAATA TTTCAGCCTT TAACTTAGCT
AACGCCTTTG GAGGATTCCT TGGGGGGATG GTATTAGATA GCCGATTAGG TGCAGGCATG
ATCCCTTACG CCGCAATAAT CATCCCCATC ATTGGTTTAT GGTTTATCTA CTCAACCAAT
AAACGTGAAC TGGTACATAG CTAA
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| Protein sequence | MNTEKMPLQV WILTLAAFAI GTAEFVIAGI LPQVATSLSI SEGQAGYLIS AYALAIVFGG
PILTIYLARF NKKAVLIGLM VLFIIGNLLS AFAPNYTSLF ISRVITGLVQ GPFYGIGAVV
ATNLVSKKMA GRAVGQMFAG LTLANVLGVP GGTWIGLQFG WHTTFLTVAG LGIVALLFIL
AVLKSAGHGE AKNIKTQLMA FKNPMLIASL AITVFAWSGF MTLYGYLAPI AMHITGFAEH
DVTWILVIVG MGLIIGNTLG GRSSDKNLQK ASMFWTLAMI VTLLLVGFTV ENKLLFIASA
FLFGIASFAN VPAMQLRVMN HGGEAQELAA TANISAFNLA NAFGGFLGGM VLDSRLGAGM
IPYAAIIIPI IGLWFIYSTN KRELVHS
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