Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0649 |
Symbol | |
ID | 5613254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 787553 |
End bp | 788209 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640931494 |
Product | hypothetical protein |
Protein accession | YP_001472389 |
Protein GI | 157373789 |
COG category | [S] Function unknown |
COG ID | [COG1357] Uncharacterized low-complexity proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAGAG AAAATGAGGT ATTCGATGGG GTTGATTTTA GCCATCAGGA TTTGAGTGAT TCACATTTTG AGCGGTGCAA ATTTTATAAC TGTAATTTTT ATCATACTGA TCTCAGCGAC AGCCGCTTTA TCAACTGCTC ATTTATAGAG CAAGGCTCAG TGAGTGGTTG TGACTTTGAA TATGCTAACT TGCAAGATTC GAGCTTCAAA GGTTGTCAGC TATCTATGGT TAATTTTAAG GGGGCTAATT GCTTTGGTGC CGAGTTTAGG AACTGTGACC TGAAAGGGGT TAACTTTCTT AAGGCCCGTT TTGCCAATCA GATCAGTAAT CAAGTGTATT TTTGTTCCGT TTATATAACG GGGTGCAATT TGTCTTACGC TAATCTTGAG CGTCAATGCA TTGAGAAATG CGATCTATTT GAAAACAGAT GGACTGGTGC AAATTTATTT AGGGCTTCAC TTAAGGGTTC TGATTTGAGT CGAGGAGACT TTTCCAGTGA TGCTTGGGGC CAGTTTGATG TGCGAGGGTG TGACCTTTCT CATGCTGAAC TTTCCGGGCT GGATCCAAGA AAGGTAGATC TTAGCAATGT TAAAATATGC ATGTGGCAGC AGGAGCAGCT ACTTGAGCCG CTAGGGGTTA TTGTTGGCTC TGACTAA
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Protein sequence | MNRENEVFDG VDFSHQDLSD SHFERCKFYN CNFYHTDLSD SRFINCSFIE QGSVSGCDFE YANLQDSSFK GCQLSMVNFK GANCFGAEFR NCDLKGVNFL KARFANQISN QVYFCSVYIT GCNLSYANLE RQCIEKCDLF ENRWTGANLF RASLKGSDLS RGDFSSDAWG QFDVRGCDLS HAELSGLDPR KVDLSNVKIC MWQQEQLLEP LGVIVGSD
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