Gene Ssed_0649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0649 
Symbol 
ID5613254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp787553 
End bp788209 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content42% 
IMG OID640931494 
Producthypothetical protein 
Protein accessionYP_001472389 
Protein GI157373789 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAGAG AAAATGAGGT ATTCGATGGG GTTGATTTTA GCCATCAGGA TTTGAGTGAT 
TCACATTTTG AGCGGTGCAA ATTTTATAAC TGTAATTTTT ATCATACTGA TCTCAGCGAC
AGCCGCTTTA TCAACTGCTC ATTTATAGAG CAAGGCTCAG TGAGTGGTTG TGACTTTGAA
TATGCTAACT TGCAAGATTC GAGCTTCAAA GGTTGTCAGC TATCTATGGT TAATTTTAAG
GGGGCTAATT GCTTTGGTGC CGAGTTTAGG AACTGTGACC TGAAAGGGGT TAACTTTCTT
AAGGCCCGTT TTGCCAATCA GATCAGTAAT CAAGTGTATT TTTGTTCCGT TTATATAACG
GGGTGCAATT TGTCTTACGC TAATCTTGAG CGTCAATGCA TTGAGAAATG CGATCTATTT
GAAAACAGAT GGACTGGTGC AAATTTATTT AGGGCTTCAC TTAAGGGTTC TGATTTGAGT
CGAGGAGACT TTTCCAGTGA TGCTTGGGGC CAGTTTGATG TGCGAGGGTG TGACCTTTCT
CATGCTGAAC TTTCCGGGCT GGATCCAAGA AAGGTAGATC TTAGCAATGT TAAAATATGC
ATGTGGCAGC AGGAGCAGCT ACTTGAGCCG CTAGGGGTTA TTGTTGGCTC TGACTAA
 
Protein sequence
MNRENEVFDG VDFSHQDLSD SHFERCKFYN CNFYHTDLSD SRFINCSFIE QGSVSGCDFE 
YANLQDSSFK GCQLSMVNFK GANCFGAEFR NCDLKGVNFL KARFANQISN QVYFCSVYIT
GCNLSYANLE RQCIEKCDLF ENRWTGANLF RASLKGSDLS RGDFSSDAWG QFDVRGCDLS
HAELSGLDPR KVDLSNVKIC MWQQEQLLEP LGVIVGSD