| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0642 |
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| Symbol | groEL |
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| ID | 5613544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 778963 |
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| End bp | 780612 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931487 |
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| Product | chaperonin GroEL |
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| Protein accession | YP_001472382 |
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| Protein GI | 157373782 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
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| TIGRFAM ID | [TIGR02348] chaperonin GroL |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCTA AAGAAGTATT ATTTGGTAAC GATGCACGCG TAAAAATGCT TGCAGGCGTT
AACGTACTGG CAAACGCGGT TAAAGTAACT TTAGGCCCAA AGGGTCGTAA CGTAGTACTG
GACAAGAGCT TCGGTGCTCC GCTTATCACT AAAGATGGTG TGTCAGTGGC CAAAGAGATC
GAACTTGAAG ACAAGTTTGA AAACATGGGC GCACAGATGG TTAAAGAAGT TGCTTCTAAA
GCCAATGATG CAGCCGGTGA CGGTACGACT ACCGCTACCG TTCTTGCACA ATCTATCGTT
ACTGAAGGTC TTAAAGCCGT TGCCGCTGGC ATGAACCCAA TGGATCTTAA ACGCGGTATC
GATAAGGCAG TTATTGCTGC TGTTGCCGAG CTAAAGACAC TTTCTCAAGA GTGTGCAGAC
ACTAACGCTA TCGCTCAGGT TGGTACTATT TCGGCTAACT CTGATGAAAC TATCGGTGAA
ATCATCGCAA CAGCGATGGA AAAAGTCGGT AAAGAGGGTG TGATCACCGT TGAAGAAGGT
CAGGCACTGG AAAACGAGCT GGATGTAGTT GAAGGTATGC AGTTTGACCG CGGTTACCTC
TCTCCATACT TCATCAACAA GCCAGAAACC GGCAGTGTTG AACTGGAAAG CCCGTTCATC
CTGCTTGTTG ACAAGAAAGT ATCAAACATC CGTGAACTAC TACCTATCCT TGAAGGTCTG
GCTAAAACCG GTAAGCCACT GCTTATCGTT GCCGAAGACG TTGAAGGCGA AGCACTAGCG
ACATTGGTTG TGAACAACAT GCGTGGCATC GTTAAAGTTG CTGCGGTTAA AGCTCCAGGT
TTCGGTGACC GTCGTAAGGC TATGCTACAA GATATCGCCA TCTTGACCGG CGGTACTGTT
ATCGCCGAAG AGATTGGTCT TGAGCTTGAG AAAGCGACAC TGGAAGACTT AGGTACAGCT
AAGCGCGTTA TCATCACTAA AGATGACACC ACTATCATCG ACGGTACCGG TGAGCAAGAT
CAGATCAAAG CACGTGTTGC ACAGATCAAG ATCCAGGCTG AAGAATCAAC GTCAGATTAT
GACAAAGAGA AGCTTCAAGA GCGTATGGCT AAACTTGCTG GCGGCGTAGC TGTTATCAAG
GTTGGCGCAG CCACAGAAGT TGAGATGAAA GAGAAGAAAG CTCGCGTAGA AGATGCACTA
CACGCGACCC GCGCCGCTGT TGAAGAGGGT GTGGTAGCCG GTGGTGGTGT TGCTCTGGTA
CGTGTTGCCA GCAAAATCGC CGAAGTTGAA GTGATCAACG AAGACCAGAA GCACGGTGTG
GTTATCGCAC TACGCGCTAT GGAAGCACCA CTTCGTCAAA TCGCAGCTAA CGCGGGTGAA
GAGGGTTCAG TTGTTGCTAA CAACGTGAAG AACGGCTCTG GTAACTACGG TTACAACGCG
GGTAACGATA CATACGGTGA CATGCTTGAG ATGGGTATCC TTGACCCAAC TAAGGTAACC
CGTAGCGCGC TACAGTTCGC AGCGTCTATC GCTGGTCTTA TGATCACAAC CGAAGCAATG
GTTGGCGAAG TGAAAGAAGA TGCTCCTGCT GGTGATATGG GCGGCATGGG TGGAATGGGT
GGTATGGGCG GTATGGGCGG CATGATGTGA
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| Protein sequence | MAAKEVLFGN DARVKMLAGV NVLANAVKVT LGPKGRNVVL DKSFGAPLIT KDGVSVAKEI
ELEDKFENMG AQMVKEVASK ANDAAGDGTT TATVLAQSIV TEGLKAVAAG MNPMDLKRGI
DKAVIAAVAE LKTLSQECAD TNAIAQVGTI SANSDETIGE IIATAMEKVG KEGVITVEEG
QALENELDVV EGMQFDRGYL SPYFINKPET GSVELESPFI LLVDKKVSNI RELLPILEGL
AKTGKPLLIV AEDVEGEALA TLVVNNMRGI VKVAAVKAPG FGDRRKAMLQ DIAILTGGTV
IAEEIGLELE KATLEDLGTA KRVIITKDDT TIIDGTGEQD QIKARVAQIK IQAEESTSDY
DKEKLQERMA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG VVAGGGVALV
RVASKIAEVE VINEDQKHGV VIALRAMEAP LRQIAANAGE EGSVVANNVK NGSGNYGYNA
GNDTYGDMLE MGILDPTKVT RSALQFAASI AGLMITTEAM VGEVKEDAPA GDMGGMGGMG
GMGGMGGMM
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