Gene Ssed_0625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0625 
Symbol 
ID5613037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp753945 
End bp756851 
Gene Length2907 bp 
Protein Length968 aa 
Translation table11 
GC content49% 
IMG OID640931470 
ProductATP-dependent helicase HepA 
Protein accessionYP_001472365 
Protein GI157373765 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTTTT CCTTAGGTCA ACGCTGGATA AGTGATACCG AATCTGAACT TGGTTTAGGT 
ACAGTAGTCG CACTGGAAGG CCGTATGGTC ACCCTGATGT TTCCGGCAAC GGATGAGAAT
AGATTGTTCT CACGCACCGA TGCTCCCTTA ACTCGTGTTA TTTTTAATCC GGGCGATAAA
GCCGAAAGCC ACGAAGGCTG GAGCCTGACC GTTAGTGAAG TCGAGGAGAA AGATAACCTC
ATTATCTATC ATGGTATTCA TAGCGAAACC GGTGAGCAGG CCAGTCTGAG AGAGACCTTG
CTTAACCATA ATATTCGTTT CAATAAACCA CAAGATAGAC TCTTTGCCGG ACAAATTGAT
CGCCTCGAAC GTTTCGGCGT CCGCTATCAA TGCCAGTTAT TAAGACACAA GTTAGCAACC
TCCGATCTTC TTGGCTTACA GGGCCCAAGA GTCGGTCTGA TCCCTCATCA GCAGTGGATT
GCCCATGAAG TCGGACGCCG TTTTGCCCCC CGGGTATTAC TGGCCGATGA GGTGGGACTG
GGTAAGACGA TTGAAGCGGG TCTGATTATT CATCAGCAAC TGCTTACCGG TCGCGCCGAA
CGTATTCTGG TTATCGTACC CGATACACTA CGCCATCAAT GGCTGGTCGA AATGCTGCGT
AGGTTTAACC TCAAATTCTC AGTCTTCGAT GAAGATAGAT GCATCGAAGC CTATGCCGAT
AATGATAACC CTTTCTATAC CGAACAACTG GTTATCTGTT CACTCGAACT TCTGCGTAAG
AAAAAACGCT TAGAGCAAGC CTTGGATGCC GACTGGGATC TGATGGTCGT CGATGAAGCT
CATCACCTGG AGTGGACCGA AGATGCGCCT AGCCGTGCAT ATCGTGTCGT AGAAGCACTC
AGTGAAGTCG TCCCCGGCGT TCTCTTGTTG ACAGCGACCC CGGATCAATT GGGCCATCAG
AGTCACTTTG CCCGTTTACG TCTGCTGGAT CCGGATCGTT TCTACGACTA TGAGGCGTTC
CTTAAAGAGG AGAGCAGCTA TAAAGATGTT GCCAGTGCCG CCGACGCCCT GGCCAGCGGA
AATAAGCTAC CCGACGATGC TATCAATAGC CTTACAGAGT TACTGTCTGA AAAAGATATC
ACACCTAGCA TTAACGTGAT TCAGGCGACA GATATCGATC CCGATCAACA GCAAGATGCC
CGCGATGAAC TTTTGCAGGA GCTACTGGAC AGACACGGTA CCGGCCGCGT CCTGTACCGT
AACAGTCGTG CCTCGGTAAA AGGCTTCCCG ACCCGTATCT TCAATGCGTA TCCTCAGGCG
ATGCCATCTC AATATGTCAC TGCCGCGCGC GTCGGTGCCA TGATGAATGG CCATCTCGAT
ACTCAAGGTA AAGTTAAGCA AGCACTGAGT CCCGAAAAAA TCTATCAGGA TTTTGACAGC
AACAGCGCCA GTTGGTGGAA GTTCGACCCC AGAGTCGACT GGCTCATCAA TTTCTTAAAA
GAAAACCGCA GAAAGAAAGT GCTGATCATT GCTAGTCAGG CAGAAACAGC GCTCAGCCTC
GAAGAGGCAT TGCGTACACG TGAAGGTATT CAGACGACCG TATTCCATGA AGGTATGTCT
ATCATTGAAC GCGATAAAGC GGGAGCCTAC TTTGCCCAAG AAACGGGTGG TGCTCAGGCT
CTTATCTGTA GCGAAATTGG TTCGGAAGGT CGTAACTTCC AGTTCGCCAG CCAGCTTATC
CTGTTCGATC TGCCACTTAA CCCTGATCTG CTCGAGCAAC GTATCGGCCG TCTGGACCGT
ATCGGTCAGA ACAATGATGT CGAGATCCAC GTACCTTACC TCGAAAAAAC GGCTCAAGAG
TGCTTGATGC AGTGGTACCA CAAAGGACTC AACGCGTTTG AACAGACTTG TCCGAGTGGA
CATATTCTCT TCAGTGAGTT TGCAGAGCCC TTGTTAGATG TGCTGATTAA TCAAAATGAT
GACTCGCTCA CCGAGCTGCT TAACCATACC CAAACTCGAT ACAAAGAGTT GAAAACTGTG
ATGGAGCAAG GTCGGGACAA GCTACTTGAG ATTAACTCAC ATGGTGGCGA ACGGGCTAAT
AAGTTAGTAC AGAGCCTGGC CGCTCGTGAT GAAGATACTC AGCTTATCGG CTCAGTTATA
CGCTTATGGG ATGTTATCGG TGTCGAGCAG GAGGACTGTG GTGAAAACGC TATCGTCTTG
AATCCGAGTG AACACATGAT GTTCCCAACC TATCCGGGTC TTCCCGAAGA TGGCATCACA
GTCACCTTCG ACAGAGAGAT GGCATTGTCG CGAGACGATA TTGCGCTTAT CACTCAAGAG
CACCCGATAG TGCAGACAGG ACTGGATCTG ATCACTTCAT CTGAGACGGG TACCACCAGT
GTTGCCGTGT TAAAGAACAA GGCATTACCG GCTGGAACCA TCTTCCTTGA GCTGATCTAC
ATGGCCGATG CTTCGGCGCC TAAGTCCAGC CAGTTATACC GTTACCTGCC GCCAACGCCG
GTACGTATCT TACTGGATAA GAATGGTAAT AACCTGTCTG ACAATGTGAC CTATGAGAGC
TTTAACAAGC AGCTCAGTGC GGTTAACCGT CATATAGCCA GCAAGTTAGT CAATGCGTCG
CAGACGATTT TACATCCTCT GTTCGCCAAG GGCGAAGAGT TTGCCGAAGT TGAACTAAAG
CTCTTAGCCG ATAGTGCCAG AGCCAAGATG ACCTCTCAGC TCACATTGGA GTTAGAGCGT
CTCGAAGCCC TTAAAGCGGT GAACCCAAAC ATCCGTGATG AGGAGCTTGA GCATATCCGT
GAGCAGATGA ATGAGCTCAA TGGATACCTC GATGGCTGTC TGCTGCAACT CGATGCGATT
CGCTTAGTTC TTGTAAGTCA CGCTTAA
 
Protein sequence
MPFSLGQRWI SDTESELGLG TVVALEGRMV TLMFPATDEN RLFSRTDAPL TRVIFNPGDK 
AESHEGWSLT VSEVEEKDNL IIYHGIHSET GEQASLRETL LNHNIRFNKP QDRLFAGQID
RLERFGVRYQ CQLLRHKLAT SDLLGLQGPR VGLIPHQQWI AHEVGRRFAP RVLLADEVGL
GKTIEAGLII HQQLLTGRAE RILVIVPDTL RHQWLVEMLR RFNLKFSVFD EDRCIEAYAD
NDNPFYTEQL VICSLELLRK KKRLEQALDA DWDLMVVDEA HHLEWTEDAP SRAYRVVEAL
SEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYEAF LKEESSYKDV ASAADALASG
NKLPDDAINS LTELLSEKDI TPSINVIQAT DIDPDQQQDA RDELLQELLD RHGTGRVLYR
NSRASVKGFP TRIFNAYPQA MPSQYVTAAR VGAMMNGHLD TQGKVKQALS PEKIYQDFDS
NSASWWKFDP RVDWLINFLK ENRRKKVLII ASQAETALSL EEALRTREGI QTTVFHEGMS
IIERDKAGAY FAQETGGAQA LICSEIGSEG RNFQFASQLI LFDLPLNPDL LEQRIGRLDR
IGQNNDVEIH VPYLEKTAQE CLMQWYHKGL NAFEQTCPSG HILFSEFAEP LLDVLINQND
DSLTELLNHT QTRYKELKTV MEQGRDKLLE INSHGGERAN KLVQSLAARD EDTQLIGSVI
RLWDVIGVEQ EDCGENAIVL NPSEHMMFPT YPGLPEDGIT VTFDREMALS RDDIALITQE
HPIVQTGLDL ITSSETGTTS VAVLKNKALP AGTIFLELIY MADASAPKSS QLYRYLPPTP
VRILLDKNGN NLSDNVTYES FNKQLSAVNR HIASKLVNAS QTILHPLFAK GEEFAEVELK
LLADSARAKM TSQLTLELER LEALKAVNPN IRDEELEHIR EQMNELNGYL DGCLLQLDAI
RLVLVSHA