| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0617 |
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| Symbol | |
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| ID | 5612086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 745998 |
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| End bp | 746912 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931462 |
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| Product | periplasmic solute binding protein |
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| Protein accession | YP_001472357 |
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| Protein GI | 157373757 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00875081 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCATCA ATTCTAATCT GACTAAAATC GCCGCGCTTG CCTTGATGGC TAGCTACTCC
TGTGTCGCGA ATGCCGGGCT GAATATTTTT GCCTGTGAGC CTGAGTATGC GGCTCTTGCG
AAAGAGTTAG CGCCCGACGC TAAGATCTAT TCTGCGACGA CAGCGATGCA AGATCCACAT
CAGGTGCAAG CCAGACCAAG CCTAATCGCC AAGATGCGAC AAGCGGATCT TGCGGTCTGT
GCTGGTGCCG AGCTCGAGGT GGGTTGGTTA CCTATGTTGC AGATGAAATC TTCCAACTCT
AAGGTACGCT CTACCGATCT GGGACTCTTC TATGCTGCGG ATCAGGTGGA GACATTAGAT
ATGCTTGAGT CTGTCGACCG TAGTATGGGA GATGTACATG CTCAGGGGAA TCCGCATCTG
CACTTTTCTC CAGAGCGTGT CTTACAGGTT GCACAGGCAT TAACGGATAA GCTGATACAG
TTGGATCCCG ATTCGAAAGC CGAATATCAA ACGTCTCTGA CTGACTTCAG TGAGAGATGG
AGTGAGGCTA TCCCTCTGTG GAAAGCGAAG GCGGCTTCTC TGCGAGGTAA GAAAGTGATT
GCTTACCACT CAAGCTTTCG ATATCTGTTC AGCTGGGTTG GGATAGAGCA GGTCGCCGAT
CTGGAGCCAA AACCTGGCCT GCCGCCGAGC AGCAGTCATC TGGCAAGCCT GCTTAAGCGC
ACAGAAGCCG GAGATATCAT GGCAATTGTC GTGGCATCTT ATCAGGATGA GCGTGGCGCT
AACTGGTTAG GTGAGAGAGC TAATCTGCCC GTTCAGGTCT TACCTATGTC TGTGGGAGGG
AATGAACAGA GCCAAGATCT GTTTAGCCTA TATGACAGTG TGTTAGATCT CTTGTTGGGC
GTTAAGAGCA AGTAA
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| Protein sequence | MRINSNLTKI AALALMASYS CVANAGLNIF ACEPEYAALA KELAPDAKIY SATTAMQDPH
QVQARPSLIA KMRQADLAVC AGAELEVGWL PMLQMKSSNS KVRSTDLGLF YAADQVETLD
MLESVDRSMG DVHAQGNPHL HFSPERVLQV AQALTDKLIQ LDPDSKAEYQ TSLTDFSERW
SEAIPLWKAK AASLRGKKVI AYHSSFRYLF SWVGIEQVAD LEPKPGLPPS SSHLASLLKR
TEAGDIMAIV VASYQDERGA NWLGERANLP VQVLPMSVGG NEQSQDLFSL YDSVLDLLLG
VKSK
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